miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 44906 0.66 0.493929
Target:  5'- uGGCGCUCGCccucgcacucuaGGCgGCGCuUC-AGCGc -3'
miRNA:   3'- gCCGCGGGCG------------UCGgCGCGcAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 52511 0.66 0.493929
Target:  5'- gCGGCGCCaaagGCAgcGCCGCGCucaUCgaaAGCa -3'
miRNA:   3'- -GCCGCGGg---CGU--CGGCGCGc--AGa--UCGc -5'
6935 3' -63.9 NC_001875.2 + 88526 0.66 0.493012
Target:  5'- gCGGCacGCCCGCcGCgGCGuCGUUUauuaacuuguugcGGCGg -3'
miRNA:   3'- -GCCG--CGGGCGuCGgCGC-GCAGA-------------UCGC- -5'
6935 3' -63.9 NC_001875.2 + 90401 0.66 0.493929
Target:  5'- cCGGCGCCUGU-G-CGCGCG-C-AGCGg -3'
miRNA:   3'- -GCCGCGGGCGuCgGCGCGCaGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 18162 0.66 0.511484
Target:  5'- gCGGCGCgCGCGacGCCGCcacugugGCGgugCcGGCGg -3'
miRNA:   3'- -GCCGCGgGCGU--CGGCG-------CGCa--GaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 80648 0.66 0.512415
Target:  5'- gCGGCGCcagaaCCGC-GCCGuCGUGggcaaaCUGGCGc -3'
miRNA:   3'- -GCCGCG-----GGCGuCGGC-GCGCa-----GAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 63445 0.66 0.493929
Target:  5'- uCGGCGUCgGCGGCCaGCcGCGa--GGCGu -3'
miRNA:   3'- -GCCGCGGgCGUCGG-CG-CGCagaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 128782 0.66 0.512415
Target:  5'- cCGGCGCgCCGCuG-CGCGCcUCUuacGCGc -3'
miRNA:   3'- -GCCGCG-GGCGuCgGCGCGcAGAu--CGC- -5'
6935 3' -63.9 NC_001875.2 + 30961 0.66 0.503135
Target:  5'- uGGCGCCCacgcGCGcGCUGCGCcUCgcGCu -3'
miRNA:   3'- gCCGCGGG----CGU-CGGCGCGcAGauCGc -5'
6935 3' -63.9 NC_001875.2 + 37888 0.66 0.512415
Target:  5'- -cGCGCCaGCGGCUugcugGCGCGgcaCUGGCa -3'
miRNA:   3'- gcCGCGGgCGUCGG-----CGCGCa--GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 90367 0.66 0.550189
Target:  5'- cCGGCGCauaCUGCAgGCCGgGCucGUCgaUGGCGc -3'
miRNA:   3'- -GCCGCG---GGCGU-CGGCgCG--CAG--AUCGC- -5'
6935 3' -63.9 NC_001875.2 + 42559 0.66 0.521765
Target:  5'- uGGuCGCgCC-CAGCCGCGCcagGUC-GGCGc -3'
miRNA:   3'- gCC-GCG-GGcGUCGGCGCG---CAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 48517 0.66 0.503135
Target:  5'- uGGCGCgCCGCccGgCGCGCGcCccGCGg -3'
miRNA:   3'- gCCGCG-GGCGu-CgGCGCGCaGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 65901 0.66 0.503135
Target:  5'- uGGUGCagaaaCCGCGGCUGCGCuuugaUCaGGCGc -3'
miRNA:   3'- gCCGCG-----GGCGUCGGCGCGc----AGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 95306 0.66 0.521765
Target:  5'- aCGGUGCgCGcCAG-CGC-CGUUUGGCGa -3'
miRNA:   3'- -GCCGCGgGC-GUCgGCGcGCAGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 49877 0.66 0.521765
Target:  5'- cCGGCGCCaaccaagugguCGUcgAGCUGCGCGUgCUaaucAGCu -3'
miRNA:   3'- -GCCGCGG-----------GCG--UCGGCGCGCA-GA----UCGc -5'
6935 3' -63.9 NC_001875.2 + 54575 0.66 0.530236
Target:  5'- gCGGCGgCCGCuucgcccGGCgGCGCGcCcacGGCGc -3'
miRNA:   3'- -GCCGCgGGCG-------UCGgCGCGCaGa--UCGC- -5'
6935 3' -63.9 NC_001875.2 + 91686 0.66 0.493929
Target:  5'- gCGGCGCCCGUuuuuUUGgGCGaCUGGCu -3'
miRNA:   3'- -GCCGCGGGCGuc--GGCgCGCaGAUCGc -5'
6935 3' -63.9 NC_001875.2 + 83010 0.66 0.521765
Target:  5'- aCGGCGUCaGCuGGaCCGCGCG-C-AGCGa -3'
miRNA:   3'- -GCCGCGGgCG-UC-GGCGCGCaGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 35388 0.66 0.503135
Target:  5'- aGGCGCugcuguCCGUGGCgCGCGCG---AGCGa -3'
miRNA:   3'- gCCGCG------GGCGUCG-GCGCGCagaUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.