miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 45465 1.07 0.000712
Target:  5'- uCGGCGCCCGCAGCCGCGCGUCUAGCGc -3'
miRNA:   3'- -GCCGCGGGCGUCGGCGCGCAGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 90984 0.85 0.028334
Target:  5'- uGGCGCCCGCGG-UGCGCGUCuUGGCGa -3'
miRNA:   3'- gCCGCGGGCGUCgGCGCGCAG-AUCGC- -5'
6935 3' -63.9 NC_001875.2 + 74156 0.78 0.088481
Target:  5'- gCGGCGCCCGCcGCCGCcagcuuggacGCGUUUuGCGa -3'
miRNA:   3'- -GCCGCGGGCGuCGGCG----------CGCAGAuCGC- -5'
6935 3' -63.9 NC_001875.2 + 111976 0.78 0.095469
Target:  5'- aCGGCGCCCGC-GCCGCGacgcggccgaGUCUuGCGc -3'
miRNA:   3'- -GCCGCGGGCGuCGGCGCg---------CAGAuCGC- -5'
6935 3' -63.9 NC_001875.2 + 84172 0.78 0.097912
Target:  5'- gCGGCGCgCCGCGGCCGCguccguGCGUUUGcGCa -3'
miRNA:   3'- -GCCGCG-GGCGUCGGCG------CGCAGAU-CGc -5'
6935 3' -63.9 NC_001875.2 + 114012 0.77 0.11076
Target:  5'- uCGGCGCCCucgcgcaugGCGGCCGCGCgGUCcagauggUAGCa -3'
miRNA:   3'- -GCCGCGGG---------CGUCGGCGCG-CAG-------AUCGc -5'
6935 3' -63.9 NC_001875.2 + 50541 0.76 0.119687
Target:  5'- aGGCGCCgccgGCGGCgCGCGUGUCUuuuGCGg -3'
miRNA:   3'- gCCGCGGg---CGUCG-GCGCGCAGAu--CGC- -5'
6935 3' -63.9 NC_001875.2 + 99059 0.76 0.122707
Target:  5'- gCGGCGCCCGCccacGCCGCGCGaggacGCGc -3'
miRNA:   3'- -GCCGCGGGCGu---CGGCGCGCagau-CGC- -5'
6935 3' -63.9 NC_001875.2 + 95432 0.76 0.128959
Target:  5'- gCGGCGCCgGcCAGCgUGCGCGgCUGGCa -3'
miRNA:   3'- -GCCGCGGgC-GUCG-GCGCGCaGAUCGc -5'
6935 3' -63.9 NC_001875.2 + 1381 0.75 0.138892
Target:  5'- aCGGCGCgUGCuAGCgGUGCGUC-AGCGg -3'
miRNA:   3'- -GCCGCGgGCG-UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 82198 0.75 0.149522
Target:  5'- gGGCGCCgGCGGCCGCucGUGUCgccGCu -3'
miRNA:   3'- gCCGCGGgCGUCGGCG--CGCAGau-CGc -5'
6935 3' -63.9 NC_001875.2 + 74367 0.75 0.153227
Target:  5'- aCGGCGUgCGCGGCCGCgGCGcguUCaGGCGc -3'
miRNA:   3'- -GCCGCGgGCGUCGGCG-CGC---AGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 72932 0.74 0.164446
Target:  5'- uGGCGUCCGCGGCuucguagCGCGCGUUc-GCGg -3'
miRNA:   3'- gCCGCGGGCGUCG-------GCGCGCAGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 100977 0.74 0.168891
Target:  5'- -aGCGCCCGCgcugcaGGCCGCGgCGUUUgcGGCGg -3'
miRNA:   3'- gcCGCGGGCG------UCGGCGC-GCAGA--UCGC- -5'
6935 3' -63.9 NC_001875.2 + 41820 0.73 0.190476
Target:  5'- cCGGCG-CCGCGGCCaguuGCGCGUCcAGUu -3'
miRNA:   3'- -GCCGCgGGCGUCGG----CGCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 84320 0.73 0.199769
Target:  5'- gCGGCGCCUGCGGUacccggaGCGgCGagUGGCGg -3'
miRNA:   3'- -GCCGCGGGCGUCGg------CGC-GCagAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 33045 0.73 0.209454
Target:  5'- gGGCG-CCGC-GCCGCGCGgaUAGCGu -3'
miRNA:   3'- gCCGCgGGCGuCGGCGCGCagAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 117940 0.73 0.214446
Target:  5'- cCGGCGUgCGC-GCCGcCGCGUUUGGUu -3'
miRNA:   3'- -GCCGCGgGCGuCGGC-GCGCAGAUCGc -5'
6935 3' -63.9 NC_001875.2 + 81345 0.73 0.214446
Target:  5'- gCGGCGCgCUGguGCCGCGCG-CacGCGc -3'
miRNA:   3'- -GCCGCG-GGCguCGGCGCGCaGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 61510 0.72 0.224738
Target:  5'- uCGGCG-CCGCAGuCCGCGUGcUCgcgcuUGGCGg -3'
miRNA:   3'- -GCCGCgGGCGUC-GGCGCGC-AG-----AUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.