miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 6484 0.7 0.302122
Target:  5'- aCGGCGCCCaacGCGgaguGCCGCGCcaacacgCUGGCc -3'
miRNA:   3'- -GCCGCGGG---CGU----CGGCGCGca-----GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 79610 0.71 0.258145
Target:  5'- aGGuCGUugagCCGCAGUCGCGCGUCcAGUu -3'
miRNA:   3'- gCC-GCG----GGCGUCGGCGCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 108668 0.71 0.258145
Target:  5'- aCGGCcguGCCCGCAGCCGC-CGUgCccGCa -3'
miRNA:   3'- -GCCG---CGGGCGUCGGCGcGCA-GauCGc -5'
6935 3' -63.9 NC_001875.2 + 17956 0.71 0.264693
Target:  5'- -uGUGCCCgGCAGCCaGCGCGUCcccacucuggauucgGGCGa -3'
miRNA:   3'- gcCGCGGG-CGUCGG-CGCGCAGa--------------UCGC- -5'
6935 3' -63.9 NC_001875.2 + 110759 0.71 0.27015
Target:  5'- gCGGCGaCCGCcGCCGCGCG-CUuuuGCc -3'
miRNA:   3'- -GCCGCgGGCGuCGGCGCGCaGAu--CGc -5'
6935 3' -63.9 NC_001875.2 + 32079 0.71 0.282601
Target:  5'- uGGCGCUCGUgcaGGCuUGCGCGUCacAGCa -3'
miRNA:   3'- gCCGCGGGCG---UCG-GCGCGCAGa-UCGc -5'
6935 3' -63.9 NC_001875.2 + 23816 0.71 0.288995
Target:  5'- gCGGCGUCgggCGC-GCCGUGUcUCUGGCGg -3'
miRNA:   3'- -GCCGCGG---GCGuCGGCGCGcAGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 66040 0.7 0.295502
Target:  5'- uGGCGCCgCGCAGgcaCCGCGCGcCgacgccGCGc -3'
miRNA:   3'- gCCGCGG-GCGUC---GGCGCGCaGau----CGC- -5'
6935 3' -63.9 NC_001875.2 + 11083 0.7 0.295502
Target:  5'- uGGCGCgCGCccuggacacGGCCGC-CGUCUcGGCGc -3'
miRNA:   3'- gCCGCGgGCG---------UCGGCGcGCAGA-UCGC- -5'
6935 3' -63.9 NC_001875.2 + 12381 0.72 0.246579
Target:  5'- gGGUGCCaCGguGCCGCuCGUCgucgGGCc -3'
miRNA:   3'- gCCGCGG-GCguCGGCGcGCAGa---UCGc -5'
6935 3' -63.9 NC_001875.2 + 111797 0.72 0.235446
Target:  5'- gCGGUGCaCGCGGCCGacgGCGcCUGGCu -3'
miRNA:   3'- -GCCGCGgGCGUCGGCg--CGCaGAUCGc -5'
6935 3' -63.9 NC_001875.2 + 61510 0.72 0.224738
Target:  5'- uCGGCG-CCGCAGuCCGCGUGcUCgcgcuUGGCGg -3'
miRNA:   3'- -GCCGCgGGCGUC-GGCGCGC-AG-----AUCGC- -5'
6935 3' -63.9 NC_001875.2 + 74156 0.78 0.088481
Target:  5'- gCGGCGCCCGCcGCCGCcagcuuggacGCGUUUuGCGa -3'
miRNA:   3'- -GCCGCGGGCGuCGGCG----------CGCAGAuCGC- -5'
6935 3' -63.9 NC_001875.2 + 111976 0.78 0.095469
Target:  5'- aCGGCGCCCGC-GCCGCGacgcggccgaGUCUuGCGc -3'
miRNA:   3'- -GCCGCGGGCGuCGGCGCg---------CAGAuCGC- -5'
6935 3' -63.9 NC_001875.2 + 114012 0.77 0.11076
Target:  5'- uCGGCGCCCucgcgcaugGCGGCCGCGCgGUCcagauggUAGCa -3'
miRNA:   3'- -GCCGCGGG---------CGUCGGCGCG-CAG-------AUCGc -5'
6935 3' -63.9 NC_001875.2 + 74367 0.75 0.153227
Target:  5'- aCGGCGUgCGCGGCCGCgGCGcguUCaGGCGc -3'
miRNA:   3'- -GCCGCGgGCGUCGGCG-CGC---AGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 41820 0.73 0.190476
Target:  5'- cCGGCG-CCGCGGCCaguuGCGCGUCcAGUu -3'
miRNA:   3'- -GCCGCgGGCGUCGG----CGCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 84320 0.73 0.199769
Target:  5'- gCGGCGCCUGCGGUacccggaGCGgCGagUGGCGg -3'
miRNA:   3'- -GCCGCGGGCGUCGg------CGC-GCagAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 81345 0.73 0.214446
Target:  5'- gCGGCGCgCUGguGCCGCGCG-CacGCGc -3'
miRNA:   3'- -GCCGCG-GGCguCGGCGCGCaGauCGC- -5'
6935 3' -63.9 NC_001875.2 + 117940 0.73 0.214446
Target:  5'- cCGGCGUgCGC-GCCGcCGCGUUUGGUu -3'
miRNA:   3'- -GCCGCGgGCGuCGGC-GCGCAGAUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.