miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6935 3' -63.9 NC_001875.2 + 1316 0.69 0.3435
Target:  5'- aGGCGCgUGCuauuuuuAGCgGUGCGUC-AGCGg -3'
miRNA:   3'- gCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1381 0.75 0.138892
Target:  5'- aCGGCGCgUGCuAGCgGUGCGUC-AGCGg -3'
miRNA:   3'- -GCCGCGgGCG-UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1406 0.69 0.351652
Target:  5'- nGGCGCCCugGUgugcuauuuuuAGCgGUGCGUC-AGCGg -3'
miRNA:   3'- gCCGCGGG--CG-----------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1478 0.69 0.358423
Target:  5'- aGGCGCgUGCuacuuuuAGCgGUGCGUC-AGCGa -3'
miRNA:   3'- gCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1543 0.71 0.28835
Target:  5'- aCGGCGCgUGCuauuuuuAGCgGUGCGUC-AGCGa -3'
miRNA:   3'- -GCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1609 0.71 0.28835
Target:  5'- aCGGCGCgUGCuauuuuuAGCgGUGCGUC-AGCGa -3'
miRNA:   3'- -GCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1675 0.71 0.28835
Target:  5'- aCGGCGCgUGCuauuuuuAGCgGUGCGUC-AGCGa -3'
miRNA:   3'- -GCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 1801 0.68 0.397675
Target:  5'- aCGGCGCgUGCuauuuuuAGCgGUGCGUC-AGCa -3'
miRNA:   3'- -GCCGCGgGCG-------UCGgCGCGCAGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 1868 0.66 0.520827
Target:  5'- aGGCGCgUGCuauuuuuAGCaGUGCGUC-AGCGg -3'
miRNA:   3'- gCCGCGgGCG-------UCGgCGCGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 2295 0.72 0.23004
Target:  5'- gCGcGCGCgCCGUGGCCGCGCG-C-AGCu -3'
miRNA:   3'- -GC-CGCG-GGCGUCGGCGCGCaGaUCGc -5'
6935 3' -63.9 NC_001875.2 + 3134 0.69 0.351652
Target:  5'- gCGGCgaaGCCCGCuGCgcggaCGCgGCGUCgGGCGg -3'
miRNA:   3'- -GCCG---CGGGCGuCG-----GCG-CGCAGaUCGC- -5'
6935 3' -63.9 NC_001875.2 + 3176 0.67 0.466791
Target:  5'- aGGUgaGCCgGCGGCCGCGCaccagagacagGUUgcGGCGg -3'
miRNA:   3'- gCCG--CGGgCGUCGGCGCG-----------CAGa-UCGC- -5'
6935 3' -63.9 NC_001875.2 + 4526 0.69 0.382437
Target:  5'- gCGGCGCaCCGcCGGCUGCG-GUUccuGCGg -3'
miRNA:   3'- -GCCGCG-GGC-GUCGGCGCgCAGau-CGC- -5'
6935 3' -63.9 NC_001875.2 + 5754 0.67 0.466791
Target:  5'- gCGGCGCuuGCuuuGCaccgcguucaGCGCGUcCUGGUa -3'
miRNA:   3'- -GCCGCGggCGu--CGg---------CGCGCA-GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 6484 0.7 0.302122
Target:  5'- aCGGCGCCCaacGCGgaguGCCGCGCcaacacgCUGGCc -3'
miRNA:   3'- -GCCGCGGG---CGU----CGGCGCGca-----GAUCGc -5'
6935 3' -63.9 NC_001875.2 + 8515 0.66 0.512415
Target:  5'- gGGCGUgCGCucuGCCuGCGCGUCg---- -3'
miRNA:   3'- gCCGCGgGCGu--CGG-CGCGCAGaucgc -5'
6935 3' -63.9 NC_001875.2 + 9922 0.66 0.493929
Target:  5'- uGGCGCgCG-GGCCGCaaGuauUCUAGCGg -3'
miRNA:   3'- gCCGCGgGCgUCGGCGcgC---AGAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 11083 0.7 0.295502
Target:  5'- uGGCGCgCGCccuggacacGGCCGC-CGUCUcGGCGc -3'
miRNA:   3'- gCCGCGgGCG---------UCGGCGcGCAGA-UCGC- -5'
6935 3' -63.9 NC_001875.2 + 11817 0.67 0.466791
Target:  5'- uCGGUGUuuGUGGUCGCGCcggUGGCGg -3'
miRNA:   3'- -GCCGCGggCGUCGGCGCGcagAUCGC- -5'
6935 3' -63.9 NC_001875.2 + 11937 0.69 0.334763
Target:  5'- gCGGCGCgCCGacugugcgcgcgacCGGCgGCGCGUugcaaagcaCUGGCGa -3'
miRNA:   3'- -GCCGCG-GGC--------------GUCGgCGCGCA---------GAUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.