miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 5' -62 NC_001875.2 + 72566 0.66 0.601372
Target:  5'- gGGCGCgGGCGcggGCGCuGCgGGUg- -3'
miRNA:   3'- aCUGCGgCCGCaaaCGCG-CGgCCGgu -5'
6961 5' -62 NC_001875.2 + 3075 0.66 0.571743
Target:  5'- -cGCGCCGGgGUcgcccacgGCGUGCaCGcGCCGg -3'
miRNA:   3'- acUGCGGCCgCAaa------CGCGCG-GC-CGGU- -5'
6961 5' -62 NC_001875.2 + 129529 0.66 0.621243
Target:  5'- aGGCcgaGCUGGCcgagcUGCGCGC-GGCCAc -3'
miRNA:   3'- aCUG---CGGCCGcaa--ACGCGCGgCCGGU- -5'
6961 5' -62 NC_001875.2 + 105437 0.66 0.625223
Target:  5'- uUGcAUGCCGGCGUUUgGCgacaacgaguuguuuGCGCacuguuuugCGGCCGc -3'
miRNA:   3'- -AC-UGCGGCCGCAAA-CG---------------CGCG---------GCCGGU- -5'
6961 5' -62 NC_001875.2 + 114086 0.66 0.615276
Target:  5'- cGACGUcugcguguacgcaaaCGGCGUUUGgcuggacaCGaCGCCGGUCu -3'
miRNA:   3'- aCUGCG---------------GCCGCAAAC--------GC-GCGGCCGGu -5'
6961 5' -62 NC_001875.2 + 9318 0.66 0.611301
Target:  5'- gGACGCaauCGGCGaa-GCuGC-CCGGCCGg -3'
miRNA:   3'- aCUGCG---GCCGCaaaCG-CGcGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 6485 0.66 0.581587
Target:  5'- cGGCGCCcaacGCGgagUGcCGCGCCaacacgcuGGCCGc -3'
miRNA:   3'- aCUGCGGc---CGCaa-AC-GCGCGG--------CCGGU- -5'
6961 5' -62 NC_001875.2 + 68891 0.66 0.592455
Target:  5'- uUGACGCCGcguccggcgaGUGUcgagucaacgagcugUGCGaggGCCGGCCGg -3'
miRNA:   3'- -ACUGCGGC----------CGCAa--------------ACGCg--CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 26535 0.66 0.611301
Target:  5'- uUGA-GCUGGCGcUUgagucgGCGUGCUGGCa- -3'
miRNA:   3'- -ACUgCGGCCGC-AAa-----CGCGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 71894 0.66 0.585535
Target:  5'- uUGGCGUUcuuguccgcccacugGGCGU--GCGCGUCGGCgAg -3'
miRNA:   3'- -ACUGCGG---------------CCGCAaaCGCGCGGCCGgU- -5'
6961 5' -62 NC_001875.2 + 32825 0.66 0.591466
Target:  5'- cGGCGCCGcuugcgaGCGUggcaccaaaaccuggUGC-CGuCCGGCCAa -3'
miRNA:   3'- aCUGCGGC-------CGCAa--------------ACGcGC-GGCCGGU- -5'
6961 5' -62 NC_001875.2 + 65754 0.66 0.591466
Target:  5'- gGGCcUCGGCGUauucgUGCGCGgCGGgCGg -3'
miRNA:   3'- aCUGcGGCCGCAa----ACGCGCgGCCgGU- -5'
6961 5' -62 NC_001875.2 + 97870 0.66 0.591466
Target:  5'- --gUGCCGGuCGgcUGCGCGCCgcacgGGCa- -3'
miRNA:   3'- acuGCGGCC-GCaaACGCGCGG-----CCGgu -5'
6961 5' -62 NC_001875.2 + 7132 0.66 0.571743
Target:  5'- -cGCGCCGcuuGCcag-GCGCGuuGGCCGa -3'
miRNA:   3'- acUGCGGC---CGcaaaCGCGCggCCGGU- -5'
6961 5' -62 NC_001875.2 + 47672 0.66 0.571743
Target:  5'- gGACG-CGGCcgcgGCGCGCCGcGCg- -3'
miRNA:   3'- aCUGCgGCCGcaaaCGCGCGGC-CGgu -5'
6961 5' -62 NC_001875.2 + 129166 0.66 0.581587
Target:  5'- aGGCGCC-GCaGUUgccccagGCGcCGCCGGCg- -3'
miRNA:   3'- aCUGCGGcCG-CAAa------CGC-GCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 42748 0.66 0.581587
Target:  5'- cGACGCgcaUGGUGagcgGCGCGCucggguCGGCCGu -3'
miRNA:   3'- aCUGCG---GCCGCaaa-CGCGCG------GCCGGU- -5'
6961 5' -62 NC_001875.2 + 109839 0.66 0.591466
Target:  5'- gGGCaguGCCGGCGgauuugcUGCGCGCguuuGCCAa -3'
miRNA:   3'- aCUG---CGGCCGCaa-----ACGCGCGgc--CGGU- -5'
6961 5' -62 NC_001875.2 + 91200 0.66 0.581587
Target:  5'- ---aGCCGGCGcgUGCGCGCCcaguugaGCUu -3'
miRNA:   3'- acugCGGCCGCaaACGCGCGGc------CGGu -5'
6961 5' -62 NC_001875.2 + 116789 0.66 0.601372
Target:  5'- uUGAUGCCGGgGUacaccuggUGCGaguugaGCUGGUCu -3'
miRNA:   3'- -ACUGCGGCCgCAa-------ACGCg-----CGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.