miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 5' -62 NC_001875.2 + 2282 0.69 0.431734
Target:  5'- uUGACGUCGugauGCGc--GCGCGCCguGGCCGc -3'
miRNA:   3'- -ACUGCGGC----CGCaaaCGCGCGG--CCGGU- -5'
6961 5' -62 NC_001875.2 + 2665 0.69 0.415413
Target:  5'- cGGCGCCGGCGgcgccuggggcaacUGCgGCGCCucGGCa- -3'
miRNA:   3'- aCUGCGGCCGCaa------------ACG-CGCGG--CCGgu -5'
6961 5' -62 NC_001875.2 + 3075 0.66 0.571743
Target:  5'- -cGCGCCGGgGUcgcccacgGCGUGCaCGcGCCGg -3'
miRNA:   3'- acUGCGGCCgCAaa------CGCGCG-GC-CGGU- -5'
6961 5' -62 NC_001875.2 + 3214 0.68 0.467278
Target:  5'- cGGCGguuggaUGGCGUggGCGCGuuGGCg- -3'
miRNA:   3'- aCUGCg-----GCCGCAaaCGCGCggCCGgu -5'
6961 5' -62 NC_001875.2 + 3650 0.7 0.357913
Target:  5'- aGcCGCUGGCGUgugugcUGCGCGCuugCGcGCCAa -3'
miRNA:   3'- aCuGCGGCCGCAa-----ACGCGCG---GC-CGGU- -5'
6961 5' -62 NC_001875.2 + 5504 0.69 0.440473
Target:  5'- aGcACGaCCGGCGcacGCGCgcaguuuacGCCGGCCGc -3'
miRNA:   3'- aC-UGC-GGCCGCaaaCGCG---------CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 6485 0.66 0.581587
Target:  5'- cGGCGCCcaacGCGgagUGcCGCGCCaacacgcuGGCCGc -3'
miRNA:   3'- aCUGCGGc---CGCaa-AC-GCGCGG--------CCGGU- -5'
6961 5' -62 NC_001875.2 + 6993 0.73 0.232774
Target:  5'- ---gGCCGGUGUgggUGUGCuGCUGGCCGg -3'
miRNA:   3'- acugCGGCCGCAa--ACGCG-CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 7075 0.7 0.379111
Target:  5'- cGACGCCaccGGCcuGUgcgcagacaugcagcGCGCGCUGGCCGa -3'
miRNA:   3'- aCUGCGG---CCG--CAaa-------------CGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 7132 0.66 0.571743
Target:  5'- -cGCGCCGcuuGCcag-GCGCGuuGGCCGa -3'
miRNA:   3'- acUGCGGC---CGcaaaCGCGCggCCGGU- -5'
6961 5' -62 NC_001875.2 + 7332 0.67 0.552181
Target:  5'- gGACGUCaGCGaccUGCuGC-CCGGCCAa -3'
miRNA:   3'- aCUGCGGcCGCaa-ACG-CGcGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 7447 0.73 0.238328
Target:  5'- -cGCGCCGGCGaUUGCgGCGguguaCGGCCGa -3'
miRNA:   3'- acUGCGGCCGCaAACG-CGCg----GCCGGU- -5'
6961 5' -62 NC_001875.2 + 8499 0.67 0.561939
Target:  5'- gGGCGCCGucCGUgUGgGCGCCGcGCa- -3'
miRNA:   3'- aCUGCGGCc-GCAaACgCGCGGC-CGgu -5'
6961 5' -62 NC_001875.2 + 9027 0.76 0.161877
Target:  5'- gGACGCCuuGCGUUUGgaGcCGCCGGCCGc -3'
miRNA:   3'- aCUGCGGc-CGCAAACg-C-GCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 9318 0.66 0.611301
Target:  5'- gGACGCaauCGGCGaa-GCuGC-CCGGCCGg -3'
miRNA:   3'- aCUGCG---GCCGCaaaCG-CGcGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 9695 0.75 0.183042
Target:  5'- uUGGgGCuCGcCGUcgUGCGCGCCGGCCGc -3'
miRNA:   3'- -ACUgCG-GCcGCAa-ACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 10953 0.67 0.532826
Target:  5'- cGugG-UGGCGUUUGUGaCGCaagCGGCCu -3'
miRNA:   3'- aCugCgGCCGCAAACGC-GCG---GCCGGu -5'
6961 5' -62 NC_001875.2 + 11813 0.73 0.238328
Target:  5'- -cGCGUCGGUGUUUGUggucGCGCCGGUg- -3'
miRNA:   3'- acUGCGGCCGCAAACG----CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 11996 0.72 0.274009
Target:  5'- gGGCGCgGGUGUggugGCGaGCgCGGCCAa -3'
miRNA:   3'- aCUGCGgCCGCAaa--CGCgCG-GCCGGU- -5'
6961 5' -62 NC_001875.2 + 12200 0.68 0.476399
Target:  5'- gGGCGCguaaaacGCGUUcaGCGUGCCGGUCAg -3'
miRNA:   3'- aCUGCGgc-----CGCAAa-CGCGCGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.