miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 5' -62 NC_001875.2 + 69440 1.07 0.000879
Target:  5'- uUGACGCCGGCGUUUGCGCGCCGGCCAc -3'
miRNA:   3'- -ACUGCGGCCGCAAACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 81979 0.9 0.01664
Target:  5'- uUGGCGCCGGCaag-GCGCGCCGGCCGg -3'
miRNA:   3'- -ACUGCGGCCGcaaaCGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 111886 0.89 0.017557
Target:  5'- aGGCGCCGGcCGgaccgUGCGCGCCGGCCGc -3'
miRNA:   3'- aCUGCGGCC-GCaa---ACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 38641 0.86 0.033337
Target:  5'- gUGACGCC-GCGUaUUGCGCGCUGGCCGg -3'
miRNA:   3'- -ACUGCGGcCGCA-AACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 90037 0.83 0.053682
Target:  5'- cGGCGCCGGCGc--GCGUGCCGGCgGa -3'
miRNA:   3'- aCUGCGGCCGCaaaCGCGCGGCCGgU- -5'
6961 5' -62 NC_001875.2 + 72713 0.78 0.116824
Target:  5'- -cGCGCCGuuaauuGCGcUUGCGCGUCGGCCAg -3'
miRNA:   3'- acUGCGGC------CGCaAACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 37583 0.77 0.13595
Target:  5'- -uGCGCCGGCGcgaGCGCcgcgGCCGGCCGc -3'
miRNA:   3'- acUGCGGCCGCaaaCGCG----CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 72745 0.76 0.145102
Target:  5'- cGACGCCGucagccuggaaacCGUUUcCGCGCCGGCCAa -3'
miRNA:   3'- aCUGCGGCc------------GCAAAcGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 75562 0.76 0.146558
Target:  5'- aUGGCGUCGGCGUUggUGauaGCGCUGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 117343 0.76 0.154045
Target:  5'- cGGCGCgGGCGaaccgGCGgGCCGGCUg -3'
miRNA:   3'- aCUGCGgCCGCaaa--CGCgCGGCCGGu -5'
6961 5' -62 NC_001875.2 + 9027 0.76 0.161877
Target:  5'- gGACGCCuuGCGUUUGgaGcCGCCGGCCGc -3'
miRNA:   3'- aCUGCGGc-CGCAAACg-C-GCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 89408 0.76 0.165925
Target:  5'- cUGACGCaGGCGUUUGCGUGCU-GCUAc -3'
miRNA:   3'- -ACUGCGgCCGCAAACGCGCGGcCGGU- -5'
6961 5' -62 NC_001875.2 + 41468 0.75 0.169647
Target:  5'- cGGCGCgcgCGGCGUgucUUGUguggucuGCGCCGGCCGg -3'
miRNA:   3'- aCUGCG---GCCGCA---AACG-------CGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 68711 0.75 0.170065
Target:  5'- -uGCGCCGGCc---GCGCGCCcGGCCGc -3'
miRNA:   3'- acUGCGGCCGcaaaCGCGCGG-CCGGU- -5'
6961 5' -62 NC_001875.2 + 126322 0.75 0.177749
Target:  5'- cGGCgGCCGGCGUaaacugcgcgcGUGCGCCGGUCGu -3'
miRNA:   3'- aCUG-CGGCCGCAaa---------CGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 95433 0.75 0.178622
Target:  5'- cGGCGCCGGCcagcgUGCGCGgCUGGCa- -3'
miRNA:   3'- aCUGCGGCCGcaa--ACGCGC-GGCCGgu -5'
6961 5' -62 NC_001875.2 + 9695 0.75 0.183042
Target:  5'- uUGGgGCuCGcCGUcgUGCGCGCCGGCCGc -3'
miRNA:   3'- -ACUgCG-GCcGCAa-ACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 75628 0.75 0.192173
Target:  5'- uUGGCGUCGGCGUUgGCgucgGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAAaCG----CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 31686 0.75 0.196887
Target:  5'- --gUGCCGGCGUggaccgccgcUUGCGCGCC-GCCGg -3'
miRNA:   3'- acuGCGGCCGCA----------AACGCGCGGcCGGU- -5'
6961 5' -62 NC_001875.2 + 78413 0.75 0.196887
Target:  5'- -cGCGCUGGcCGUgUGCGCGCUGGgCAa -3'
miRNA:   3'- acUGCGGCC-GCAaACGCGCGGCCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.