miRNA display CGI


Results 1 - 20 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 5' -62 NC_001875.2 + 75664 0.72 0.267778
Target:  5'- uUGGCGUCGGCGUcgGCgauggcguugGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAaaCG----------CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 75478 0.74 0.216761
Target:  5'- aUGGCGUCGGCGUUggUGaugGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 75604 0.74 0.216761
Target:  5'- aUGGCGUCGGCGUUg--GCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAAacgCGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 30043 0.74 0.221991
Target:  5'- -aACGCCGGCcaaUUGCuuGCCGGCCGu -3'
miRNA:   3'- acUGCGGCCGca-AACGcgCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 41798 0.73 0.232774
Target:  5'- gUGAuuucCGCCGGCac--GCGCGCCGGCg- -3'
miRNA:   3'- -ACU----GCGGCCGcaaaCGCGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 7447 0.73 0.238328
Target:  5'- -cGCGCCGGCGaUUGCgGCGguguaCGGCCGa -3'
miRNA:   3'- acUGCGGCCGCaAACG-CGCg----GCCGGU- -5'
6961 5' -62 NC_001875.2 + 111814 0.73 0.243422
Target:  5'- cGGCGCCuGGCugcuccgcgugacGgcUGCGCgaGCCGGCCAg -3'
miRNA:   3'- aCUGCGG-CCG-------------CaaACGCG--CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 103313 0.73 0.247446
Target:  5'- cGAUGaCCGGCGUgccgggcgacgcgUGCGCGaCGGCUAg -3'
miRNA:   3'- aCUGC-GGCCGCAa------------ACGCGCgGCCGGU- -5'
6961 5' -62 NC_001875.2 + 32788 0.73 0.255659
Target:  5'- cGGCGUgGGCGggcGcCGCGCCGGCa- -3'
miRNA:   3'- aCUGCGgCCGCaaaC-GCGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 75448 0.74 0.216761
Target:  5'- aUGGCGUCGGCGUUggUGaugGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 75400 0.74 0.216761
Target:  5'- aUGGCGUCGGCGUUggUGaugGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 75298 0.74 0.216761
Target:  5'- aUGGCGUCGGCGUUggUGaugGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 111886 0.89 0.017557
Target:  5'- aGGCGCCGGcCGgaccgUGCGCGCCGGCCGc -3'
miRNA:   3'- aCUGCGGCC-GCaa---ACGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 37583 0.77 0.13595
Target:  5'- -uGCGCCGGCGcgaGCGCcgcgGCCGGCCGc -3'
miRNA:   3'- acUGCGGCCGCaaaCGCG----CGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 75562 0.76 0.146558
Target:  5'- aUGGCGUCGGCGUUggUGauaGCGCUGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAA--ACg--CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 117343 0.76 0.154045
Target:  5'- cGGCGCgGGCGaaccgGCGgGCCGGCUg -3'
miRNA:   3'- aCUGCGgCCGCaaa--CGCgCGGCCGGu -5'
6961 5' -62 NC_001875.2 + 68711 0.75 0.170065
Target:  5'- -uGCGCCGGCc---GCGCGCCcGGCCGc -3'
miRNA:   3'- acUGCGGCCGcaaaCGCGCGG-CCGGU- -5'
6961 5' -62 NC_001875.2 + 126322 0.75 0.177749
Target:  5'- cGGCgGCCGGCGUaaacugcgcgcGUGCGCCGGUCGu -3'
miRNA:   3'- aCUG-CGGCCGCAaa---------CGCGCGGCCGGU- -5'
6961 5' -62 NC_001875.2 + 75628 0.75 0.192173
Target:  5'- uUGGCGUCGGCGUUgGCgucgGCGUCGGCg- -3'
miRNA:   3'- -ACUGCGGCCGCAAaCG----CGCGGCCGgu -5'
6961 5' -62 NC_001875.2 + 31686 0.75 0.196887
Target:  5'- --gUGCCGGCGUggaccgccgcUUGCGCGCC-GCCGg -3'
miRNA:   3'- acuGCGGCCGCA----------AACGCGCGGcCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.