miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 5' -58.6 NC_001875.2 + 34554 0.66 0.764143
Target:  5'- uUGCACGCCGUauuugGCGUGcaaaGGCgCCa -3'
miRNA:   3'- -ACGUGCGGCGga---CGUAUucg-UCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 76900 0.66 0.764143
Target:  5'- cGCGCGCaaaggggcggCGCCcaGCGacgacgaGAGCGGCUCCa -3'
miRNA:   3'- aCGUGCG----------GCGGa-CGUa------UUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 22628 0.66 0.764143
Target:  5'- gGCAUGCUaCUUGCG--AGCGGUgCCCa -3'
miRNA:   3'- aCGUGCGGcGGACGUauUCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 81436 0.66 0.764143
Target:  5'- aGCugGCCGUCUGC----GCcGUCCg -3'
miRNA:   3'- aCGugCGGCGGACGuauuCGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 118329 0.66 0.764143
Target:  5'- cGCGCGCUGCaggugaugaacCUGUuuuUGaacagcGGCGGCCCg -3'
miRNA:   3'- aCGUGCGGCG-----------GACGu--AU------UCGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 16442 0.66 0.764143
Target:  5'- gGaCGCGgCGUUUGCcuuUGAGguGCCCg -3'
miRNA:   3'- aC-GUGCgGCGGACGu--AUUCguCGGGg -5'
6968 5' -58.6 NC_001875.2 + 92183 0.66 0.764143
Target:  5'- cGCGCGCCGCCgGCccAAacucgcgcGCGGUUCg -3'
miRNA:   3'- aCGUGCGGCGGaCGuaUU--------CGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 102044 0.66 0.764143
Target:  5'- --uGCGCCGCCaGCGcccgcaCAGUCCCg -3'
miRNA:   3'- acgUGCGGCGGaCGUauuc--GUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 91073 0.66 0.764143
Target:  5'- aGCACGCCGUUUaGCGacuGCAGaaugaugCCCg -3'
miRNA:   3'- aCGUGCGGCGGA-CGUauuCGUCg------GGG- -5'
6968 5' -58.6 NC_001875.2 + 66057 0.66 0.764143
Target:  5'- cGCGCGCCgacGCCgcgcGCGUGcucgccCAGCCgCCg -3'
miRNA:   3'- aCGUGCGG---CGGa---CGUAUuc----GUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 128647 0.66 0.764143
Target:  5'- cGC-CGCCGCaacCUGUcucugGUGcGCGGCCgCCg -3'
miRNA:   3'- aCGuGCGGCG---GACG-----UAUuCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 44670 0.66 0.764143
Target:  5'- cGCACGCUGUCguuggugaugcGCGUGAccucGCuGCCCa -3'
miRNA:   3'- aCGUGCGGCGGa----------CGUAUU----CGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 29738 0.66 0.76319
Target:  5'- aUGUugGCCaGCCUGCcgacacugacgcuGUuacuguGCucGCCCCa -3'
miRNA:   3'- -ACGugCGG-CGGACG-------------UAuu----CGu-CGGGG- -5'
6968 5' -58.6 NC_001875.2 + 7550 0.66 0.754563
Target:  5'- cGCaACGaccugaCGCCgGCGgacGAGCGGCaCCCc -3'
miRNA:   3'- aCG-UGCg-----GCGGaCGUa--UUCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 121283 0.66 0.754563
Target:  5'- cGCGCaGCUGCCUGaugGUGGGCGuGCUuuuuCCg -3'
miRNA:   3'- aCGUG-CGGCGGACg--UAUUCGU-CGG----GG- -5'
6968 5' -58.6 NC_001875.2 + 85634 0.66 0.754563
Target:  5'- cGCAgCGCCGCCacucaacgaGCucgAAGCGGUCUUg -3'
miRNA:   3'- aCGU-GCGGCGGa--------CGua-UUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 114754 0.66 0.754563
Target:  5'- gGCGCGCgGCUUGCccgccUGAcCAGCUUCa -3'
miRNA:   3'- aCGUGCGgCGGACGu----AUUcGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 99031 0.66 0.754563
Target:  5'- aGCgGCGCCguucgccgaGCUUGCcgGcGCGGCgCCCg -3'
miRNA:   3'- aCG-UGCGG---------CGGACGuaUuCGUCG-GGG- -5'
6968 5' -58.6 NC_001875.2 + 88268 0.66 0.754563
Target:  5'- cGCuCGCCGCCaGCAUGacgcuGGCGGgCg- -3'
miRNA:   3'- aCGuGCGGCGGaCGUAU-----UCGUCgGgg -5'
6968 5' -58.6 NC_001875.2 + 107987 0.66 0.754563
Target:  5'- cUGCACGuCCGCUgGCG--AGCAcuuuaaCCCCa -3'
miRNA:   3'- -ACGUGC-GGCGGaCGUauUCGUc-----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.