miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6968 5' -58.6 NC_001875.2 + 77262 0.85 0.056393
Target:  5'- gGCGCGCCGCCggGCG-AAGCGGCCgCCg -3'
miRNA:   3'- aCGUGCGGCGGa-CGUaUUCGUCGG-GG- -5'
6968 5' -58.6 NC_001875.2 + 83799 0.72 0.393108
Target:  5'- cGCGCGCCcucguGCCUGUGggcGGCGGCCa- -3'
miRNA:   3'- aCGUGCGG-----CGGACGUau-UCGUCGGgg -5'
6968 5' -58.6 NC_001875.2 + 32059 0.71 0.436907
Target:  5'- gUGUugGCCGCCgac--AGGUAGCCCg -3'
miRNA:   3'- -ACGugCGGCGGacguaUUCGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 76900 0.66 0.764143
Target:  5'- cGCGCGCaaaggggcggCGCCcaGCGacgacgaGAGCGGCUCCa -3'
miRNA:   3'- aCGUGCG----------GCGGa-CGUa------UUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 120847 0.77 0.198619
Target:  5'- gGCACGCgCGCCUGCAgcgcuucgucgcuUGAcuGCAGgCCCg -3'
miRNA:   3'- aCGUGCG-GCGGACGU-------------AUU--CGUCgGGG- -5'
6968 5' -58.6 NC_001875.2 + 127274 0.76 0.225348
Target:  5'- gGCAUGCgGCUgcucGCGUugcuGGCGGCCCCc -3'
miRNA:   3'- aCGUGCGgCGGa---CGUAu---UCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 92530 0.75 0.260635
Target:  5'- cGCACGCCGCCgGCAcggUGuGCAGCgCg -3'
miRNA:   3'- aCGUGCGGCGGaCGU---AUuCGUCGgGg -5'
6968 5' -58.6 NC_001875.2 + 119419 0.74 0.306632
Target:  5'- cGCACGCaacgGCCUGCuUGgcgcgcggcaaacAGCGGCCCg -3'
miRNA:   3'- aCGUGCGg---CGGACGuAU-------------UCGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 57207 0.73 0.329237
Target:  5'- gGCACGCUGCCgacagcGCAgu-GCAGCCg- -3'
miRNA:   3'- aCGUGCGGCGGa-----CGUauuCGUCGGgg -5'
6968 5' -58.6 NC_001875.2 + 13916 0.72 0.393108
Target:  5'- cGCACGCCgGCCUGCAgcuuGCcGUCUg -3'
miRNA:   3'- aCGUGCGG-CGGACGUauu-CGuCGGGg -5'
6968 5' -58.6 NC_001875.2 + 39594 0.73 0.343689
Target:  5'- aGCACGguCCGCgUGCAcGGGCuaaaguagcggccGGCCCCg -3'
miRNA:   3'- aCGUGC--GGCGgACGUaUUCG-------------UCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 3015 0.74 0.324768
Target:  5'- gUGCGCGUCGCCgUGCAaguuguacacgccguUGGGCAGCgCg -3'
miRNA:   3'- -ACGUGCGGCGG-ACGU---------------AUUCGUCGgGg -5'
6968 5' -58.6 NC_001875.2 + 105607 0.8 0.119227
Target:  5'- cGUACGCCGCCaUGCcccgGUAcGCGGCCCUg -3'
miRNA:   3'- aCGUGCGGCGG-ACG----UAUuCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 97123 0.73 0.367424
Target:  5'- gUGCACGCUGCCaaacucgGCuAUGgcgaacccguuggGGCGGCCCUu -3'
miRNA:   3'- -ACGUGCGGCGGa------CG-UAU-------------UCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 127427 0.79 0.146806
Target:  5'- aGCAUGCCGCCgUGCAUGAGCAagacgaugGCCg- -3'
miRNA:   3'- aCGUGCGGCGG-ACGUAUUCGU--------CGGgg -5'
6968 5' -58.6 NC_001875.2 + 121390 0.74 0.307343
Target:  5'- aGCGCGCCGCCgcgccGCGUcaAAGCuGCUgCg -3'
miRNA:   3'- aCGUGCGGCGGa----CGUA--UUCGuCGGgG- -5'
6968 5' -58.6 NC_001875.2 + 101895 0.73 0.368234
Target:  5'- aGCGcCGUCGCCuucggcUGCcUGGGCGGUCCCc -3'
miRNA:   3'- aCGU-GCGGCGG------ACGuAUUCGUCGGGG- -5'
6968 5' -58.6 NC_001875.2 + 82996 0.72 0.419048
Target:  5'- cGCuCGUCGCCgGCGggcuugAAGCGGCgCCg -3'
miRNA:   3'- aCGuGCGGCGGaCGUa-----UUCGUCGgGG- -5'
6968 5' -58.6 NC_001875.2 + 123028 0.79 0.152194
Target:  5'- gGCGCGCCGCCUGCccaacccgauucucUGGGCAGCUUg -3'
miRNA:   3'- aCGUGCGGCGGACGu-------------AUUCGUCGGGg -5'
6968 5' -58.6 NC_001875.2 + 94240 0.76 0.230935
Target:  5'- aGCACGCCGCCgUGCGgccggccGCGGCgCUCg -3'
miRNA:   3'- aCGUGCGGCGG-ACGUauu----CGUCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.