miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 48196 0.66 0.943508
Target:  5'- -aUUGCGCACUUUGGGCaaaUGCccCGACa -3'
miRNA:   3'- gcAGCGCGUGGAACUUGa--GCGa-GCUG- -5'
6977 3' -54.5 NC_001875.2 + 79805 0.66 0.943508
Target:  5'- uCGUCGgGC-CgCUUGAACgUGCcCGGCa -3'
miRNA:   3'- -GCAGCgCGuG-GAACUUGaGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 67265 0.66 0.943508
Target:  5'- gGUgGCGCGCUUgaUGAACcacgagUCGC-CGGCc -3'
miRNA:   3'- gCAgCGCGUGGA--ACUUG------AGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 41123 0.66 0.943508
Target:  5'- aCGUCGUGuCGCgCUUGAccgGCggccgCGC-CGGCa -3'
miRNA:   3'- -GCAGCGC-GUG-GAACU---UGa----GCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 43693 0.66 0.943508
Target:  5'- cCGUCGUGCGCCcacacaauuUUGGcGC-CGCUCaGCa -3'
miRNA:   3'- -GCAGCGCGUGG---------AACU-UGaGCGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 103078 0.66 0.939282
Target:  5'- --aCGCGCAuguuaaacuguccgcUCUUGGacacgucgaucgugGCUCGCUUGGCg -3'
miRNA:   3'- gcaGCGCGU---------------GGAACU--------------UGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 42508 0.66 0.9388
Target:  5'- cCG-CGUGCGCCgcaaagcUGAggcccgucguGC-CGCUCGACa -3'
miRNA:   3'- -GCaGCGCGUGGa------ACU----------UGaGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 19773 0.66 0.9388
Target:  5'- uGUCuGCGCACCUgcUGGAagacgaCGCggcCGACg -3'
miRNA:   3'- gCAG-CGCGUGGA--ACUUga----GCGa--GCUG- -5'
6977 3' -54.5 NC_001875.2 + 43789 0.66 0.9388
Target:  5'- aCGUaCGCGgGCgUUG-GCUgGCUUGGCu -3'
miRNA:   3'- -GCA-GCGCgUGgAACuUGAgCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 46591 0.66 0.9388
Target:  5'- uGUC-CGCGCCgagcgcgGAACccgCGCUCGuCg -3'
miRNA:   3'- gCAGcGCGUGGaa-----CUUGa--GCGAGCuG- -5'
6977 3' -54.5 NC_001875.2 + 41003 0.66 0.933848
Target:  5'- aCGUCGCGCACCUaaAGCaggUCGCcaaccgcgUGGCc -3'
miRNA:   3'- -GCAGCGCGUGGAacUUG---AGCGa-------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 762 0.66 0.933848
Target:  5'- -aUCGUGCACgUUGAuUUCG-UCGGCg -3'
miRNA:   3'- gcAGCGCGUGgAACUuGAGCgAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 44330 0.66 0.933848
Target:  5'- gGUCGCGUucGCUUUu-ACUCGCUUGuuGCg -3'
miRNA:   3'- gCAGCGCG--UGGAAcuUGAGCGAGC--UG- -5'
6977 3' -54.5 NC_001875.2 + 68717 0.66 0.930758
Target:  5'- gGcCGCGCGCCcggccgcuaucccaUGGACgagcggUUGCUCGACa -3'
miRNA:   3'- gCaGCGCGUGGa-------------ACUUG------AGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 117300 0.66 0.928649
Target:  5'- cCG-CGUGCGCCagcucacucuugUUGAGCg-GCUUGACa -3'
miRNA:   3'- -GCaGCGCGUGG------------AACUUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 6972 0.66 0.928649
Target:  5'- aCGgCGCGCugCUUGAcaGCgggcaucuUUGCuUCGACg -3'
miRNA:   3'- -GCaGCGCGugGAACU--UG--------AGCG-AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 57703 0.66 0.923205
Target:  5'- gCGcCGCGC-CCUcGAACUCcaGCUCuaGGCg -3'
miRNA:   3'- -GCaGCGCGuGGAaCUUGAG--CGAG--CUG- -5'
6977 3' -54.5 NC_001875.2 + 62369 0.66 0.923205
Target:  5'- gGUCGCGCGCCagGGA---GgUCGACa -3'
miRNA:   3'- gCAGCGCGUGGaaCUUgagCgAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 495 0.66 0.919819
Target:  5'- aCGUUGUGCGCCUguuuuuggcgcuccaUGGACUCuugcaaauCUCGAg -3'
miRNA:   3'- -GCAGCGCGUGGA---------------ACUUGAGc-------GAGCUg -5'
6977 3' -54.5 NC_001875.2 + 111765 0.66 0.917513
Target:  5'- --aCGUGCGCCgacgacUGGugUCGCUggUGACg -3'
miRNA:   3'- gcaGCGCGUGGa-----ACUugAGCGA--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.