Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6985 | 5' | -55.6 | NC_001875.2 | + | 17324 | 0.66 | 0.896747 |
Target: 5'- -aGAGCuGCUGGCgGuUGCGC-CGCCGc -3' miRNA: 3'- caCUCG-CGAUUGgC-AUGUGcGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 71931 | 0.66 | 0.896747 |
Target: 5'- -cGAGCGCcuUGACCGcgcgcuccGCGCGCaGCCu- -3' miRNA: 3'- caCUCGCG--AUUGGCa-------UGUGCG-CGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 30104 | 0.66 | 0.903232 |
Target: 5'- uGUGcGCGCUGuacGCCGUgACG-GUGCUGAg -3' miRNA: 3'- -CACuCGCGAU---UGGCA-UGUgCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 49853 | 0.66 | 0.890025 |
Target: 5'- uUGcGCGCcGGCCG-GCGCGCcuuGCCGGc -3' miRNA: 3'- cACuCGCGaUUGGCaUGUGCG---CGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 113402 | 0.66 | 0.883071 |
Target: 5'- ---cGCGCgccacgcgGACCGcGCcuCGCGCCGAg -3' miRNA: 3'- cacuCGCGa-------UUGGCaUGu-GCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 109923 | 0.66 | 0.890025 |
Target: 5'- ----cCGCuUAGCCaUGCACGCGCCGc -3' miRNA: 3'- cacucGCG-AUUGGcAUGUGCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 37016 | 0.66 | 0.882363 |
Target: 5'- aUGcAGCGCacgcugcaauuuaUGGCCGUgcacggcgcguGCACGCGCgCGGa -3' miRNA: 3'- cAC-UCGCG-------------AUUGGCA-----------UGUGCGCG-GCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 92721 | 0.66 | 0.896085 |
Target: 5'- uUGAGCGCgcugcccgccagcUAACCgGUGCagcaGCGCGuuGGc -3' miRNA: 3'- cACUCGCG-------------AUUGG-CAUG----UGCGCggCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 30055 | 0.66 | 0.883071 |
Target: 5'- uUGcuUGCcGGCCGUuuGCACGuCGCCGAa -3' miRNA: 3'- cACucGCGaUUGGCA--UGUGC-GCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 122013 | 0.66 | 0.878067 |
Target: 5'- aUGAGCGCUuuuggguagcacuGguccggcccaacguuACUGUGCACGCGCa-- -3' miRNA: 3'- cACUCGCGA-------------U---------------UGGCAUGUGCGCGgcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 117969 | 0.66 | 0.909478 |
Target: 5'- -cGAGCGCcaaaaUGGCCuguUGCGCGCGCg-- -3' miRNA: 3'- caCUCGCG-----AUUGGc--AUGUGCGCGgcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 32885 | 0.66 | 0.896747 |
Target: 5'- cUGcAGCGCUGcaaacgGCUGaACACGCGCgCGu -3' miRNA: 3'- cAC-UCGCGAU------UGGCaUGUGCGCG-GCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 38851 | 0.66 | 0.883071 |
Target: 5'- uUGAGCGCUAcaUGaaaGCGCGCCa- -3' miRNA: 3'- cACUCGCGAUugGCaugUGCGCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 122131 | 0.66 | 0.896747 |
Target: 5'- -cGGGCGCggcgcGGCCGgcgcGCACGaCGgCGAg -3' miRNA: 3'- caCUCGCGa----UUGGCa---UGUGC-GCgGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 40093 | 0.66 | 0.875888 |
Target: 5'- --cGGCGCUGACgCGccacugGCugGCGCUGu -3' miRNA: 3'- cacUCGCGAUUG-GCa-----UGugCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 64560 | 0.66 | 0.887963 |
Target: 5'- --uGGUGCUGGCCGgcgACucgugguucaucaaGCGCGCCa- -3' miRNA: 3'- cacUCGCGAUUGGCa--UG--------------UGCGCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 8498 | 0.66 | 0.875888 |
Target: 5'- -cGGGCGCcguCCGUGUggGCGCCGc -3' miRNA: 3'- caCUCGCGauuGGCAUGugCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 36594 | 0.66 | 0.890025 |
Target: 5'- aUGcGGCGC-AGCCGcUGCGCGuCGCCc- -3' miRNA: 3'- cAC-UCGCGaUUGGC-AUGUGC-GCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 55320 | 0.66 | 0.896747 |
Target: 5'- aGUGGcGCGC-GACgGUGaugACGCGCCGc -3' miRNA: 3'- -CACU-CGCGaUUGgCAUg--UGCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 52530 | 0.66 | 0.883071 |
Target: 5'- ---cGCGCUcAUCGaaaGCACGCGCCa- -3' miRNA: 3'- cacuCGCGAuUGGCa--UGUGCGCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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