miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 5' -55.6 NC_001875.2 + 963 0.66 0.903232
Target:  5'- cUGAGC---AACCGUucuuGCACGCGgCGAc -3'
miRNA:   3'- cACUCGcgaUUGGCA----UGUGCGCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 1723 0.68 0.810918
Target:  5'- -cGGGCGCgacACCGgu--CGCGCCGc -3'
miRNA:   3'- caCUCGCGau-UGGCauguGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 2289 0.68 0.801965
Target:  5'- cGUGAuGCGCgcgcGCCGUGgcCGCGCGCa-- -3'
miRNA:   3'- -CACU-CGCGau--UGGCAU--GUGCGCGgcu -5'
6985 5' -55.6 NC_001875.2 + 3081 0.72 0.571359
Target:  5'- -gGGGuCGCccacGgCGUGCACGCGCCGGg -3'
miRNA:   3'- caCUC-GCGau--UgGCAUGUGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 5946 0.7 0.715404
Target:  5'- gGUGGGCGC-GGCCucgcaGUACACGUgaauguggucGCCGAc -3'
miRNA:   3'- -CACUCGCGaUUGG-----CAUGUGCG----------CGGCU- -5'
6985 5' -55.6 NC_001875.2 + 6721 0.68 0.801965
Target:  5'- uGUGAGCGCgggcgacauaAACCGcauCACGCGCa-- -3'
miRNA:   3'- -CACUCGCGa---------UUGGCau-GUGCGCGgcu -5'
6985 5' -55.6 NC_001875.2 + 6935 0.67 0.868483
Target:  5'- cGUGAGCaacGCg--UCGUGCGUGCGCCGc -3'
miRNA:   3'- -CACUCG---CGauuGGCAUGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 7003 0.68 0.817087
Target:  5'- gGUGuGCuGCUGGCCGgcgGCGCguaucugaccuuuaGCGCCGc -3'
miRNA:   3'- -CACuCG-CGAUUGGCa--UGUG--------------CGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 7106 0.7 0.69308
Target:  5'- -cGcGCGCUGGCCGacauugaccgcCACGCGCCGc -3'
miRNA:   3'- caCuCGCGAUUGGCau---------GUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 8498 0.66 0.875888
Target:  5'- -cGGGCGCcguCCGUGUggGCGCCGc -3'
miRNA:   3'- caCUCGCGauuGGCAUGugCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 9621 0.71 0.653982
Target:  5'- cGUuuGUGCUAAgcugCGUGCGCGCGCCGu -3'
miRNA:   3'- -CAcuCGCGAUUg---GCAUGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 9709 0.69 0.755018
Target:  5'- cGUGcGCGCcGGCCGcGC-CGCGcCCGAa -3'
miRNA:   3'- -CACuCGCGaUUGGCaUGuGCGC-GGCU- -5'
6985 5' -55.6 NC_001875.2 + 9988 0.68 0.810918
Target:  5'- -aGGGCGUa---CGUGCACGCGCUu- -3'
miRNA:   3'- caCUCGCGauugGCAUGUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 11938 0.75 0.417121
Target:  5'- -cGGcGCGCcGACUGUGCGCGCGaCCGGc -3'
miRNA:   3'- caCU-CGCGaUUGGCAUGUGCGC-GGCU- -5'
6985 5' -55.6 NC_001875.2 + 12198 0.69 0.735395
Target:  5'- uUGGGCGCguaaAACgCGUucaGCGUGCCGGu -3'
miRNA:   3'- cACUCGCGa---UUG-GCAug-UGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 13365 0.66 0.883071
Target:  5'- cGUGcGUGCUAGCCGUuuuccacaGCGCGaCGCa-- -3'
miRNA:   3'- -CACuCGCGAUUGGCA--------UGUGC-GCGgcu -5'
6985 5' -55.6 NC_001875.2 + 17324 0.66 0.896747
Target:  5'- -aGAGCuGCUGGCgGuUGCGC-CGCCGc -3'
miRNA:   3'- caCUCG-CGAUUGgC-AUGUGcGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 18277 0.69 0.755018
Target:  5'- --uGGCGC--GCCGUGCGCgaccGCGCCGu -3'
miRNA:   3'- cacUCGCGauUGGCAUGUG----CGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 18369 0.66 0.903232
Target:  5'- -cGGcGUGCUAAugcaauugUCGUACAC-CGCCGAa -3'
miRNA:   3'- caCU-CGCGAUU--------GGCAUGUGcGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 19002 0.67 0.860859
Target:  5'- aGUGcGCGCaGGCCGcaacgcgcuuUGCACGUGCgCGGc -3'
miRNA:   3'- -CACuCGCGaUUGGC----------AUGUGCGCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.