miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6985 5' -55.6 NC_001875.2 + 7106 0.7 0.69308
Target:  5'- -cGcGCGCUGGCCGacauugaccgcCACGCGCCGc -3'
miRNA:   3'- caCuCGCGAUUGGCau---------GUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 62348 0.71 0.612553
Target:  5'- aGUGGGCGCggcGCCaGUuuggguCGCGCGCCa- -3'
miRNA:   3'- -CACUCGCGau-UGG-CAu-----GUGCGCGGcu -5'
6985 5' -55.6 NC_001875.2 + 87067 0.71 0.612553
Target:  5'- --cGGUGCUccaGACCGUGCAcCGCGuuGAa -3'
miRNA:   3'- cacUCGCGA---UUGGCAUGU-GCGCggCU- -5'
6985 5' -55.6 NC_001875.2 + 111884 0.71 0.612553
Target:  5'- -cGAgGCGCcggccgGACCGUGCGCGCcgGCCGc -3'
miRNA:   3'- caCU-CGCGa-----UUGGCAUGUGCG--CGGCu -5'
6985 5' -55.6 NC_001875.2 + 91459 0.71 0.622907
Target:  5'- cGUGGGCGCgcauguccACCGauuucCugGCGCCGGa -3'
miRNA:   3'- -CACUCGCGau------UGGCau---GugCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 117360 0.71 0.622907
Target:  5'- -cGGGCcgGCUGGCCGUcggGgAgGCGCCGAg -3'
miRNA:   3'- caCUCG--CGAUUGGCA---UgUgCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 80619 0.71 0.622907
Target:  5'- gGUGGGCGC--GCgGaACGCGCGCuCGAc -3'
miRNA:   3'- -CACUCGCGauUGgCaUGUGCGCG-GCU- -5'
6985 5' -55.6 NC_001875.2 + 74102 0.7 0.684894
Target:  5'- uUGGGCaGCgacGCCGUGCugGCGCg-- -3'
miRNA:   3'- cACUCG-CGau-UGGCAUGugCGCGgcu -5'
6985 5' -55.6 NC_001875.2 + 79486 0.7 0.684894
Target:  5'- uUGGaCGCUGGCgCG-GCACGCGCCGc -3'
miRNA:   3'- cACUcGCGAUUG-GCaUGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 48493 0.72 0.602213
Target:  5'- uGUGAGCGCguuaaugGACUauuUugGCGCGCCGc -3'
miRNA:   3'- -CACUCGCGa------UUGGc--AugUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 40182 0.72 0.591896
Target:  5'- aUGGGCGU--GCCGUACGCGUacgGCCa- -3'
miRNA:   3'- cACUCGCGauUGGCAUGUGCG---CGGcu -5'
6985 5' -55.6 NC_001875.2 + 39303 0.72 0.581609
Target:  5'- aGUGcGCGCUGcacACCGUgccggcggcguGCGCGCGCUGc -3'
miRNA:   3'- -CACuCGCGAU---UGGCA-----------UGUGCGCGGCu -5'
6985 5' -55.6 NC_001875.2 + 110646 0.79 0.252073
Target:  5'- gGUG-GCGCUGGCCGUGcCGCGCGaCGAc -3'
miRNA:   3'- -CACuCGCGAUUGGCAU-GUGCGCgGCU- -5'
6985 5' -55.6 NC_001875.2 + 81346 0.76 0.366084
Target:  5'- -cGGcGCGCUGguGCCGcgcGCACGCGCCGGc -3'
miRNA:   3'- caCU-CGCGAU--UGGCa--UGUGCGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 53913 0.76 0.391059
Target:  5'- uGUGGGCGCgccguugcgGGCgCGUugGCGCGCaCGAu -3'
miRNA:   3'- -CACUCGCGa--------UUG-GCAugUGCGCG-GCU- -5'
6985 5' -55.6 NC_001875.2 + 70845 0.75 0.417121
Target:  5'- -cGAGUGCUAuuuuuGCgGUGCGCcaGCGCCGAc -3'
miRNA:   3'- caCUCGCGAU-----UGgCAUGUG--CGCGGCU- -5'
6985 5' -55.6 NC_001875.2 + 11938 0.75 0.417121
Target:  5'- -cGGcGCGCcGACUGUGCGCGCGaCCGGc -3'
miRNA:   3'- caCU-CGCGaUUGGCAUGUGCGC-GGCU- -5'
6985 5' -55.6 NC_001875.2 + 77500 0.74 0.462816
Target:  5'- -cGGGCGCguccaacgacgUGACCGU-CACGCGCaCGAc -3'
miRNA:   3'- caCUCGCG-----------AUUGGCAuGUGCGCG-GCU- -5'
6985 5' -55.6 NC_001875.2 + 51953 0.73 0.511005
Target:  5'- uUGGGCGCgacguGCCGcACGCGCGCgCGu -3'
miRNA:   3'- cACUCGCGau---UGGCaUGUGCGCG-GCu -5'
6985 5' -55.6 NC_001875.2 + 51316 0.73 0.520898
Target:  5'- aGUGGGCGUcGGCCagcucGCACGCGCCa- -3'
miRNA:   3'- -CACUCGCGaUUGGca---UGUGCGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.