Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6985 | 5' | -55.6 | NC_001875.2 | + | 95243 | 1.09 | 0.002702 |
Target: 5'- cGUGAGCGCUAACCGUACACGCGCCGAu -3' miRNA: 3'- -CACUCGCGAUUGGCAUGUGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 86288 | 0.79 | 0.252073 |
Target: 5'- -gGAGCGCaAAUCGUACACGUGCUGc -3' miRNA: 3'- caCUCGCGaUUGGCAUGUGCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 110646 | 0.79 | 0.252073 |
Target: 5'- gGUG-GCGCUGGCCGUGcCGCGCGaCGAc -3' miRNA: 3'- -CACuCGCGAUUGGCAU-GUGCGCgGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 78413 | 0.79 | 0.264557 |
Target: 5'- ---cGCGCUGGCCGUGUGCGCGCUGGg -3' miRNA: 3'- cacuCGCGAUUGGCAUGUGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 81346 | 0.76 | 0.366084 |
Target: 5'- -cGGcGCGCUGguGCCGcgcGCACGCGCCGGc -3' miRNA: 3'- caCU-CGCGAU--UGGCa--UGUGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 95116 | 0.76 | 0.366084 |
Target: 5'- -cGAGCGcCUAACCGUuguggaGCGCGCCa- -3' miRNA: 3'- caCUCGC-GAUUGGCAug----UGCGCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 126643 | 0.76 | 0.388512 |
Target: 5'- -cGGGCGCguaaaccuggacguUGACCGccaUGCACGCGCUGAc -3' miRNA: 3'- caCUCGCG--------------AUUGGC---AUGUGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 53913 | 0.76 | 0.391059 |
Target: 5'- uGUGGGCGCgccguugcgGGCgCGUugGCGCGCaCGAu -3' miRNA: 3'- -CACUCGCGa--------UUG-GCAugUGCGCG-GCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 70845 | 0.75 | 0.417121 |
Target: 5'- -cGAGUGCUAuuuuuGCgGUGCGCcaGCGCCGAc -3' miRNA: 3'- caCUCGCGAU-----UGgCAUGUG--CGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 111188 | 0.75 | 0.417121 |
Target: 5'- uUGGGCGC--GCUGggcgGCGCGCGCCGu -3' miRNA: 3'- cACUCGCGauUGGCa---UGUGCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 11938 | 0.75 | 0.417121 |
Target: 5'- -cGGcGCGCcGACUGUGCGCGCGaCCGGc -3' miRNA: 3'- caCU-CGCGaUUGGCAUGUGCGC-GGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 41127 | 0.74 | 0.462816 |
Target: 5'- cGUGucGCGCuUGACCGgcgGC-CGCGCCGGc -3' miRNA: 3'- -CACu-CGCG-AUUGGCa--UGuGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 77500 | 0.74 | 0.462816 |
Target: 5'- -cGGGCGCguccaacgacgUGACCGU-CACGCGCaCGAc -3' miRNA: 3'- caCUCGCG-----------AUUGGCAuGUGCGCG-GCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 51953 | 0.73 | 0.511005 |
Target: 5'- uUGGGCGCgacguGCCGcACGCGCGCgCGu -3' miRNA: 3'- cACUCGCGau---UGGCaUGUGCGCG-GCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 75371 | 0.73 | 0.511005 |
Target: 5'- --uGGCGCUGACCaacACGCGCGCgGAc -3' miRNA: 3'- cacUCGCGAUUGGca-UGUGCGCGgCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 51316 | 0.73 | 0.520898 |
Target: 5'- aGUGGGCGUcGGCCagcucGCACGCGCCa- -3' miRNA: 3'- -CACUCGCGaUUGGca---UGUGCGCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 3081 | 0.72 | 0.571359 |
Target: 5'- -gGGGuCGCccacGgCGUGCACGCGCCGGg -3' miRNA: 3'- caCUC-GCGau--UgGCAUGUGCGCGGCU- -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 83324 | 0.72 | 0.571359 |
Target: 5'- -gGGGCGCgcGCCGgGCgGCGCGCCa- -3' miRNA: 3'- caCUCGCGauUGGCaUG-UGCGCGGcu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 39303 | 0.72 | 0.581609 |
Target: 5'- aGUGcGCGCUGcacACCGUgccggcggcguGCGCGCGCUGc -3' miRNA: 3'- -CACuCGCGAU---UGGCA-----------UGUGCGCGGCu -5' |
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6985 | 5' | -55.6 | NC_001875.2 | + | 40182 | 0.72 | 0.591896 |
Target: 5'- aUGGGCGU--GCCGUACGCGUacgGCCa- -3' miRNA: 3'- cACUCGCGauUGGCAUGUGCG---CGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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