miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 130114 0.67 0.77548
Target:  5'- -cGGCGGCG-GCGCGAccgGUGUCGCGc- -3'
miRNA:   3'- uuCCGUUGCgCGUGCU---CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 127974 0.66 0.847934
Target:  5'- -uGGCGGCGCgGUGCugccGUGCCACAc- -3'
miRNA:   3'- uuCCGUUGCG-CGUGcu--CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 126981 0.69 0.683654
Target:  5'- --cGCAGCGUGCACGAgcuGUGCaCGCGu- -3'
miRNA:   3'- uucCGUUGCGCGUGCU---CACG-GUGUuu -5'
6988 3' -55.6 NC_001875.2 + 126831 0.77 0.275058
Target:  5'- cGAGGCGGCGCaaaguGCACaAGUGCCGCAc- -3'
miRNA:   3'- -UUCCGUUGCG-----CGUGcUCACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 124747 0.66 0.830924
Target:  5'- -cGGCAGCGCGCGCugcaugucUGCgCACAGg -3'
miRNA:   3'- uuCCGUUGCGCGUGcuc-----ACG-GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 122570 0.68 0.745749
Target:  5'- -cGGgGACGCGCGCGAG-GaCCugGu- -3'
miRNA:   3'- uuCCgUUGCGCGUGCUCaC-GGugUuu -5'
6988 3' -55.6 NC_001875.2 + 121431 0.66 0.822121
Target:  5'- uGGGUA--GUGCAgCGGGUGCCGCGc- -3'
miRNA:   3'- uUCCGUugCGCGU-GCUCACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 114684 0.67 0.765696
Target:  5'- -cGGCGAcCGUGCuuuuCGGGUGCCAa--- -3'
miRNA:   3'- uuCCGUU-GCGCGu---GCUCACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 114549 0.67 0.79368
Target:  5'- -cGGCGGCGCuCACGAcgcuccaGUGCgGCGGAu -3'
miRNA:   3'- uuCCGUUGCGcGUGCU-------CACGgUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 113683 0.67 0.794623
Target:  5'- -uGGCGGCGuCGCGCGc--GCCGCAc- -3'
miRNA:   3'- uuCCGUUGC-GCGUGCucaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 110820 0.68 0.715047
Target:  5'- cAGGUgGACGCGCugGuGcGCCGCGGAc -3'
miRNA:   3'- uUCCG-UUGCGCGugCuCaCGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 110006 0.66 0.864096
Target:  5'- -uGGCGuugACGCGCGCGcagcucgaccAGUGgCGCGAc -3'
miRNA:   3'- uuCCGU---UGCGCGUGC----------UCACgGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 108998 0.73 0.475204
Target:  5'- cAGGCugGACGCGUACGucGUGCCGCc-- -3'
miRNA:   3'- uUCCG--UUGCGCGUGCu-CACGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 108751 0.66 0.822121
Target:  5'- cGGGGCAgcugcACGCgGCGCGGGUuGCCGg--- -3'
miRNA:   3'- -UUCCGU-----UGCG-CGUGCUCA-CGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 107851 0.7 0.598607
Target:  5'- --uGCGACGCGCGCGAGUuggucgaaacGCUGCAu- -3'
miRNA:   3'- uucCGUUGCGCGUGCUCA----------CGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 105068 0.67 0.785126
Target:  5'- -cGGC-GCGuCGCucaACGAGUGCUACGGc -3'
miRNA:   3'- uuCCGuUGC-GCG---UGCUCACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 104475 0.69 0.694178
Target:  5'- cGGGcGCAACGUGCugGuGaGCCGCAu- -3'
miRNA:   3'- -UUC-CGUUGCGCGugCuCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 103328 0.75 0.374241
Target:  5'- cGGGCGACGCGUgcGCGAcGgcuaGCCACAAAa -3'
miRNA:   3'- uUCCGUUGCGCG--UGCU-Ca---CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 102588 0.67 0.765696
Target:  5'- -cGGCGGcCGCGCACccgcAGUauGCCACGGAa -3'
miRNA:   3'- uuCCGUU-GCGCGUGc---UCA--CGGUGUUU- -5'
6988 3' -55.6 NC_001875.2 + 102543 0.67 0.765696
Target:  5'- ---aCAACGCGCACGAcacGCCACAc- -3'
miRNA:   3'- uuccGUUGCGCGUGCUca-CGGUGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.