miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 3' -55.6 NC_001875.2 + 51709 0.83 0.113179
Target:  5'- --aGCGACGCGCACGAGUGCgACGAc -3'
miRNA:   3'- uucCGUUGCGCGUGCUCACGgUGUUu -5'
6988 3' -55.6 NC_001875.2 + 60307 0.68 0.745749
Target:  5'- cAGGCGACGCGuCGCagcgguucuuGGG-GCCGCAGc -3'
miRNA:   3'- uUCCGUUGCGC-GUG----------CUCaCGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 6729 0.67 0.762734
Target:  5'- cGGGCGacauaaaccgcaucACGCGCagcaACGAuGUGCCGCGc- -3'
miRNA:   3'- uUCCGU--------------UGCGCG----UGCU-CACGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 86609 0.66 0.855316
Target:  5'- cAAGGCGACGCGCcgccuguucgcgcGCGAcGUGUacgccaGCGAu -3'
miRNA:   3'- -UUCCGUUGCGCG-------------UGCU-CACGg-----UGUUu -5'
6988 3' -55.6 NC_001875.2 + 13908 0.72 0.515176
Target:  5'- -cGGCGGCGCGCACGccgGCCuGCAGc -3'
miRNA:   3'- uuCCGUUGCGCGUGCucaCGG-UGUUu -5'
6988 3' -55.6 NC_001875.2 + 100877 0.71 0.53567
Target:  5'- cGAGGCGcaGCGCGCGCGuGggcGCCAUg-- -3'
miRNA:   3'- -UUCCGU--UGCGCGUGCuCa--CGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 99922 0.7 0.598607
Target:  5'- cGGGCcGCGCGCGCG-GUGCagCGCGGc -3'
miRNA:   3'- uUCCGuUGCGCGUGCuCACG--GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 3047 0.7 0.630537
Target:  5'- uGGGCAGCGCGUAaGAG-GCgCGCAGc -3'
miRNA:   3'- uUCCGUUGCGCGUgCUCaCG-GUGUUu -5'
6988 3' -55.6 NC_001875.2 + 126981 0.69 0.683654
Target:  5'- --cGCAGCGUGCACGAgcuGUGCaCGCGu- -3'
miRNA:   3'- uucCGUUGCGCGUGCU---CACG-GUGUuu -5'
6988 3' -55.6 NC_001875.2 + 33030 0.68 0.745749
Target:  5'- uAAGcGCAGCGCG-GCGGGcGCCGCGc- -3'
miRNA:   3'- -UUC-CGUUGCGCgUGCUCaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 77192 0.69 0.704646
Target:  5'- -cGGCGACgGCGUuccggACGAggcGUGCCGCAAc -3'
miRNA:   3'- uuCCGUUG-CGCG-----UGCU---CACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 94671 0.69 0.683654
Target:  5'- uGGGcCAGCGCGCggcACGGGUGCUGgAAc -3'
miRNA:   3'- uUCC-GUUGCGCG---UGCUCACGGUgUUu -5'
6988 3' -55.6 NC_001875.2 + 77965 0.75 0.338918
Target:  5'- -cGGCGGCGCGCACGAccaacaggccgacgGUGCCAg--- -3'
miRNA:   3'- uuCCGUUGCGCGUGCU--------------CACGGUguuu -5'
6988 3' -55.6 NC_001875.2 + 79869 0.68 0.715047
Target:  5'- -uGGCGcgugguccACGCGCGCGcGUGCgGCAc- -3'
miRNA:   3'- uuCCGU--------UGCGCGUGCuCACGgUGUuu -5'
6988 3' -55.6 NC_001875.2 + 95243 0.73 0.446267
Target:  5'- aAGGGCGACGCGCAgCGGcuGcGCCGCAu- -3'
miRNA:   3'- -UUCCGUUGCGCGU-GCU--CaCGGUGUuu -5'
6988 3' -55.6 NC_001875.2 + 76760 0.69 0.651845
Target:  5'- cAAGG--ACGCGCuggcCGAGUGCUACAGc -3'
miRNA:   3'- -UUCCguUGCGCGu---GCUCACGGUGUUu -5'
6988 3' -55.6 NC_001875.2 + 89923 0.68 0.73561
Target:  5'- aAGGGCGGCGCGUccGCG-G-GCCACu-- -3'
miRNA:   3'- -UUCCGUUGCGCG--UGCuCaCGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 122570 0.68 0.745749
Target:  5'- -cGGgGACGCGCGCGAG-GaCCugGu- -3'
miRNA:   3'- uuCCgUUGCGCGUGCUCaC-GGugUuu -5'
6988 3' -55.6 NC_001875.2 + 108998 0.73 0.475204
Target:  5'- cAGGCugGACGCGUACGucGUGCCGCc-- -3'
miRNA:   3'- uUCCG--UUGCGCGUGCu-CACGGUGuuu -5'
6988 3' -55.6 NC_001875.2 + 28391 0.71 0.556442
Target:  5'- --cGCGGCGUGCACGAc-GCCGCAGAc -3'
miRNA:   3'- uucCGUUGCGCGUGCUcaCGGUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.