miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 45459 0.66 0.669927
Target:  5'- cGGcGCucgGCgcccgCAGCCGCGcgucuagcGCGGUGCc -3'
miRNA:   3'- aCCaCGca-CGa----GUCGGCGC--------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 79610 0.66 0.67985
Target:  5'- aGGU-CGUugaGCcgCAGUCGCGcguccaguuugcACGGCGCg -3'
miRNA:   3'- aCCAcGCA---CGa-GUCGGCGC------------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 30196 0.66 0.67985
Target:  5'- uUGGcGCc-GUUC-GCCGCGACGGcCGUu -3'
miRNA:   3'- -ACCaCGcaCGAGuCGGCGCUGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 108840 0.66 0.669927
Target:  5'- cGGUGCGcGCcCAaaaCGCGcagaucuugGCGGCGCu -3'
miRNA:   3'- aCCACGCaCGaGUcg-GCGC---------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 39324 0.66 0.630023
Target:  5'- cGGcgGCGUGCgCGcGCUGCa--GGCGCa -3'
miRNA:   3'- aCCa-CGCACGaGU-CGGCGcugCCGCG- -5'
6992 5' -61 NC_001875.2 + 67924 0.66 0.669927
Target:  5'- gGGUuCGgGUUCAuGauGCGGCGGCGCc -3'
miRNA:   3'- aCCAcGCaCGAGU-CggCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 79723 0.66 0.640016
Target:  5'- gUGGUaCGUGCgcagaauGUCGCGcucuuCGGCGCu -3'
miRNA:   3'- -ACCAcGCACGagu----CGGCGCu----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 46184 0.66 0.650002
Target:  5'- uUGGUgGCGUucaagaccGCUUcgAGCUcguugaGUGGCGGCGCu -3'
miRNA:   3'- -ACCA-CGCA--------CGAG--UCGG------CGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 122131 0.66 0.629024
Target:  5'- cGG-GCGcgGCgCGGCCGgcgcgcaCGACGGCGa -3'
miRNA:   3'- aCCaCGCa-CGaGUCGGC-------GCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 42946 0.66 0.669927
Target:  5'- ---gGCGUGCgucagCAGcCCGCG-CaGCGCg -3'
miRNA:   3'- accaCGCACGa----GUC-GGCGCuGcCGCG- -5'
6992 5' -61 NC_001875.2 + 130658 0.66 0.67985
Target:  5'- cGGUucaGCGUGg-CAaaguGCCGCGACGaCGCc -3'
miRNA:   3'- aCCA---CGCACgaGU----CGGCGCUGCcGCG- -5'
6992 5' -61 NC_001875.2 + 19105 0.66 0.669927
Target:  5'- aGGgccGUGuUGCUguGCgCGCGAC-GCGCc -3'
miRNA:   3'- aCCa--CGC-ACGAguCG-GCGCUGcCGCG- -5'
6992 5' -61 NC_001875.2 + 84427 0.66 0.640016
Target:  5'- aGGUGCcaucgGCggaUCGGgaGCGGCGGCGg -3'
miRNA:   3'- aCCACGca---CG---AGUCggCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 54442 0.66 0.669927
Target:  5'- ---cGCGUgGCggucgUUAGCCGCGGCGcCGCa -3'
miRNA:   3'- accaCGCA-CG-----AGUCGGCGCUGCcGCG- -5'
6992 5' -61 NC_001875.2 + 93403 0.66 0.659976
Target:  5'- gGGcGCGUuaaUCAGCCGUuuaGAagaGGCGCu -3'
miRNA:   3'- aCCaCGCAcg-AGUCGGCG---CUg--CCGCG- -5'
6992 5' -61 NC_001875.2 + 54726 0.66 0.659976
Target:  5'- cGG-GCGUGgaCagguAGCCGUG-CGGgCGCa -3'
miRNA:   3'- aCCaCGCACgaG----UCGGCGCuGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 82177 0.66 0.659976
Target:  5'- cGGUaCGUGCgCAaccGCCGCGggcaguACGGCGa -3'
miRNA:   3'- aCCAcGCACGaGU---CGGCGC------UGCCGCg -5'
6992 5' -61 NC_001875.2 + 117296 0.66 0.658979
Target:  5'- aUGGccGCGUGCgcCAGCUcacucuuguugaGCGgcuugacACGGCGCg -3'
miRNA:   3'- -ACCa-CGCACGa-GUCGG------------CGC-------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 31676 0.66 0.653994
Target:  5'- cUGGgccaGCGUGC-CGGCguggaccgccgcuugCGCGccgcCGGCGCa -3'
miRNA:   3'- -ACCa---CGCACGaGUCG---------------GCGCu---GCCGCG- -5'
6992 5' -61 NC_001875.2 + 97976 0.66 0.669927
Target:  5'- ---cGCcguucUGC-CGGCCGCGcACGGUGCg -3'
miRNA:   3'- accaCGc----ACGaGUCGGCGC-UGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.