miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 98742 1.1 0.000743
Target:  5'- gUGGUGCGUGCUCAGCCGCGACGGCGCc -3'
miRNA:   3'- -ACCACGCACGAGUCGGCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 69259 0.78 0.134556
Target:  5'- cUGGgccGCG-GCUCgAGCCGUGGCGGCGg -3'
miRNA:   3'- -ACCa--CGCaCGAG-UCGGCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 99272 0.78 0.145111
Target:  5'- aGGUGCGcgcggcacUGCUgCAGCCGCuccucGGCGGCGUu -3'
miRNA:   3'- aCCACGC--------ACGA-GUCGGCG-----CUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 84370 0.77 0.160357
Target:  5'- aGGUGCGcgGC-CuGCCGgGGCGGCGUc -3'
miRNA:   3'- aCCACGCa-CGaGuCGGCgCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 35064 0.77 0.168511
Target:  5'- aGGUGCccGUGCUgguuugCGGCCGCaucGACGGCGUc -3'
miRNA:   3'- aCCACG--CACGA------GUCGGCG---CUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 74369 0.76 0.176599
Target:  5'- ---gGCGUGCgCGGCCGCGGCgcguucaGGCGCg -3'
miRNA:   3'- accaCGCACGaGUCGGCGCUG-------CCGCG- -5'
6992 5' -61 NC_001875.2 + 37478 0.76 0.181437
Target:  5'- aGGUGCaGuUGCaagaguuuuuuUCGGCCgGCGACGGUGCg -3'
miRNA:   3'- aCCACG-C-ACG-----------AGUCGG-CGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 41018 0.76 0.181437
Target:  5'- gUGGU-CGUGCUCAGUCGCGAcacguCGGUGa -3'
miRNA:   3'- -ACCAcGCACGAGUCGGCGCU-----GCCGCg -5'
6992 5' -61 NC_001875.2 + 46 0.76 0.190536
Target:  5'- uUGGUGCucaaCUCGGCgGCGGCGGCGa -3'
miRNA:   3'- -ACCACGcac-GAGUCGgCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 53882 0.75 0.200033
Target:  5'- uUGGU-CGUGC--GGCCGCcGCGGCGCa -3'
miRNA:   3'- -ACCAcGCACGagUCGGCGcUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 48786 0.75 0.214534
Target:  5'- uUGGUGCuGUGgUCcuacggcAGCCGCGAucacgUGGCGCa -3'
miRNA:   3'- -ACCACG-CACgAG-------UCGGCGCU-----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 73644 0.74 0.236565
Target:  5'- cGGcUGC-UGCggCGGCUGCGGCGGCuGCg -3'
miRNA:   3'- aCC-ACGcACGa-GUCGGCGCUGCCG-CG- -5'
6992 5' -61 NC_001875.2 + 77025 0.74 0.247984
Target:  5'- aGGUGUucggGCUCggcAGCCGCGucGCGGUGCu -3'
miRNA:   3'- aCCACGca--CGAG---UCGGCGC--UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 94250 0.74 0.247984
Target:  5'- -cGUGCG-GC-CGGCCGCGGCgcucgcgccGGCGCa -3'
miRNA:   3'- acCACGCaCGaGUCGGCGCUG---------CCGCG- -5'
6992 5' -61 NC_001875.2 + 6949 0.73 0.278527
Target:  5'- -cGUGCGUGC---GCCGCGAcaucgccaCGGCGCg -3'
miRNA:   3'- acCACGCACGaguCGGCGCU--------GCCGCG- -5'
6992 5' -61 NC_001875.2 + 129963 0.73 0.291558
Target:  5'- uUGGcgGCG-GCggCGGCgGCGGCGGCGg -3'
miRNA:   3'- -ACCa-CGCaCGa-GUCGgCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 30104 0.73 0.29825
Target:  5'- -uGUGCGcGCUgUAcGCCGUGACGGUGCu -3'
miRNA:   3'- acCACGCaCGA-GU-CGGCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 73614 0.72 0.305061
Target:  5'- cUGuUGCG-GCggCGGCUGCGGCGGCuGCg -3'
miRNA:   3'- -ACcACGCaCGa-GUCGGCGCUGCCG-CG- -5'
6992 5' -61 NC_001875.2 + 42556 0.72 0.305061
Target:  5'- cGGUG-GUcGCgccCAGCCGCGccagguCGGCGCa -3'
miRNA:   3'- aCCACgCA-CGa--GUCGGCGCu-----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 63282 0.72 0.305061
Target:  5'- cGGUGCGcgaccGCcgCcGCCGCGGCGGCa- -3'
miRNA:   3'- aCCACGCa----CGa-GuCGGCGCUGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.