miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 4854 0.71 0.379681
Target:  5'- cGGaacGCGUGCaCAGCuCGUGcacgcuGCGGCGCa -3'
miRNA:   3'- aCCa--CGCACGaGUCG-GCGC------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 42556 0.72 0.305061
Target:  5'- cGGUG-GUcGCgccCAGCCGCGccagguCGGCGCa -3'
miRNA:   3'- aCCACgCA-CGa--GUCGGCGCu-----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 37614 0.72 0.326206
Target:  5'- cGGcgGCGUGCUC-GCCGaCGACauGGgGCu -3'
miRNA:   3'- aCCa-CGCACGAGuCGGC-GCUG--CCgCG- -5'
6992 5' -61 NC_001875.2 + 16834 0.72 0.340897
Target:  5'- aUGGcuUGUGUGCUagcaugcgUAGCCGUGuuaauCGGCGCc -3'
miRNA:   3'- -ACC--ACGCACGA--------GUCGGCGCu----GCCGCG- -5'
6992 5' -61 NC_001875.2 + 17739 0.71 0.35606
Target:  5'- gUGGUGCuGUGCgUCGccauGCCGCuuguggacacGGCGGCGUu -3'
miRNA:   3'- -ACCACG-CACG-AGU----CGGCG----------CUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 4501 0.71 0.35606
Target:  5'- cGuUGCGUcuGCUCcGCUGCGgaaaGCGGCGCa -3'
miRNA:   3'- aCcACGCA--CGAGuCGGCGC----UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 113618 0.71 0.363818
Target:  5'- cGGgccGCGgcgGCaagAGCgGCGACGGCGCc -3'
miRNA:   3'- aCCa--CGCa--CGag-UCGgCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 36808 0.71 0.379681
Target:  5'- cGGUGCGcGUUaCGcGCCGCGGCaguuGCGCg -3'
miRNA:   3'- aCCACGCaCGA-GU-CGGCGCUGc---CGCG- -5'
6992 5' -61 NC_001875.2 + 103116 0.71 0.379681
Target:  5'- ---cGUGgcucGCUUGGCgGCGGCGGCGCc -3'
miRNA:   3'- accaCGCa---CGAGUCGgCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 30104 0.73 0.29825
Target:  5'- -uGUGCGcGCUgUAcGCCGUGACGGUGCu -3'
miRNA:   3'- acCACGCaCGA-GU-CGGCGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 6949 0.73 0.278527
Target:  5'- -cGUGCGUGC---GCCGCGAcaucgccaCGGCGCg -3'
miRNA:   3'- acCACGCACGaguCGGCGCU--------GCCGCG- -5'
6992 5' -61 NC_001875.2 + 77025 0.74 0.247984
Target:  5'- aGGUGUucggGCUCggcAGCCGCGucGCGGUGCu -3'
miRNA:   3'- aCCACGca--CGAG---UCGGCGC--UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 99272 0.78 0.145111
Target:  5'- aGGUGCGcgcggcacUGCUgCAGCCGCuccucGGCGGCGUu -3'
miRNA:   3'- aCCACGC--------ACGA-GUCGGCG-----CUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 84370 0.77 0.160357
Target:  5'- aGGUGCGcgGC-CuGCCGgGGCGGCGUc -3'
miRNA:   3'- aCCACGCa-CGaGuCGGCgCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 35064 0.77 0.168511
Target:  5'- aGGUGCccGUGCUgguuugCGGCCGCaucGACGGCGUc -3'
miRNA:   3'- aCCACG--CACGA------GUCGGCG---CUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 74369 0.76 0.176599
Target:  5'- ---gGCGUGCgCGGCCGCGGCgcguucaGGCGCg -3'
miRNA:   3'- accaCGCACGaGUCGGCGCUG-------CCGCG- -5'
6992 5' -61 NC_001875.2 + 41018 0.76 0.181437
Target:  5'- gUGGU-CGUGCUCAGUCGCGAcacguCGGUGa -3'
miRNA:   3'- -ACCAcGCACGAGUCGGCGCU-----GCCGCg -5'
6992 5' -61 NC_001875.2 + 37478 0.76 0.181437
Target:  5'- aGGUGCaGuUGCaagaguuuuuuUCGGCCgGCGACGGUGCg -3'
miRNA:   3'- aCCACG-C-ACG-----------AGUCGG-CGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 46 0.76 0.190536
Target:  5'- uUGGUGCucaaCUCGGCgGCGGCGGCGa -3'
miRNA:   3'- -ACCACGcac-GAGUCGgCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 53882 0.75 0.200033
Target:  5'- uUGGU-CGUGC--GGCCGCcGCGGCGCa -3'
miRNA:   3'- -ACCAcGCACGagUCGGCGcUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.