miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6992 5' -61 NC_001875.2 + 46 0.76 0.190536
Target:  5'- uUGGUGCucaaCUCGGCgGCGGCGGCGa -3'
miRNA:   3'- -ACCACGcac-GAGUCGgCGCUGCCGCg -5'
6992 5' -61 NC_001875.2 + 1335 0.68 0.550716
Target:  5'- cGGUGCG---UCAGCgGCGACccugcuuuucgGGUGCg -3'
miRNA:   3'- aCCACGCacgAGUCGgCGCUG-----------CCGCG- -5'
6992 5' -61 NC_001875.2 + 1382 0.7 0.396001
Target:  5'- cGGcGCGUGCU-AGCgGUGcgucaGCGGCGCc -3'
miRNA:   3'- aCCaCGCACGAgUCGgCGC-----UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 1413 0.69 0.464668
Target:  5'- cUGGUGUgcuauuuuuagcgGUGCgUCAGCgGCGACccugcuuuucgGGUGCg -3'
miRNA:   3'- -ACCACG-------------CACG-AGUCGgCGCUG-----------CCGCG- -5'
6992 5' -61 NC_001875.2 + 1525 0.67 0.600083
Target:  5'- gGGUGCGggcGCUCucgaacGGCgCGUGcuauuuuuaGCGGUGCg -3'
miRNA:   3'- aCCACGCa--CGAG------UCG-GCGC---------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 1629 0.67 0.607057
Target:  5'- cGGUGCGUcaGCgacgacccugcuuuUCGGgUGCGAacgcucucgaaCGGCGCg -3'
miRNA:   3'- aCCACGCA--CG--------------AGUCgGCGCU-----------GCCGCG- -5'
6992 5' -61 NC_001875.2 + 1755 0.67 0.580224
Target:  5'- cGGUGC---CUCAGCgGCGACccugcuuuucgGGUGCg -3'
miRNA:   3'- aCCACGcacGAGUCGgCGCUG-----------CCGCG- -5'
6992 5' -61 NC_001875.2 + 3205 0.67 0.570344
Target:  5'- aGGuUGCG-GCggCGGUUggaugGCGugGGCGCg -3'
miRNA:   3'- aCC-ACGCaCGa-GUCGG-----CGCugCCGCG- -5'
6992 5' -61 NC_001875.2 + 4501 0.71 0.35606
Target:  5'- cGuUGCGUcuGCUCcGCUGCGgaaaGCGGCGCa -3'
miRNA:   3'- aCcACGCA--CGAGuCGGCGC----UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 4854 0.71 0.379681
Target:  5'- cGGaacGCGUGCaCAGCuCGUGcacgcuGCGGCGCa -3'
miRNA:   3'- aCCa--CGCACGaGUCG-GCGC------UGCCGCG- -5'
6992 5' -61 NC_001875.2 + 6949 0.73 0.278527
Target:  5'- -cGUGCGUGC---GCCGCGAcaucgccaCGGCGCg -3'
miRNA:   3'- acCACGCACGaguCGGCGCU--------GCCGCG- -5'
6992 5' -61 NC_001875.2 + 7002 0.71 0.34842
Target:  5'- gGGUGUGcUGCU-GGCCG--GCGGCGCg -3'
miRNA:   3'- aCCACGC-ACGAgUCGGCgcUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 7366 0.69 0.465577
Target:  5'- cGGUGCaGUGCccgccggaUCGGCCacGCGGuuGCGCg -3'
miRNA:   3'- aCCACG-CACG--------AGUCGG--CGCUgcCGCG- -5'
6992 5' -61 NC_001875.2 + 9709 0.67 0.590139
Target:  5'- -cGUGCGcGC-CGGCCGCG-CcGCGCc -3'
miRNA:   3'- acCACGCaCGaGUCGGCGCuGcCGCG- -5'
6992 5' -61 NC_001875.2 + 10142 0.68 0.540978
Target:  5'- cGG-GCGUGUUCcGCaaGCG-CGGCGUg -3'
miRNA:   3'- aCCaCGCACGAGuCGg-CGCuGCCGCG- -5'
6992 5' -61 NC_001875.2 + 11796 0.66 0.669927
Target:  5'- aGGUaGUuguUGC-CGGCCGCGuCGGUGUu -3'
miRNA:   3'- aCCA-CGc--ACGaGUCGGCGCuGCCGCG- -5'
6992 5' -61 NC_001875.2 + 11965 0.68 0.512136
Target:  5'- cGGcGCGuUGCaaAGCacugGCGACGGCGUu -3'
miRNA:   3'- aCCaCGC-ACGagUCGg---CGCUGCCGCG- -5'
6992 5' -61 NC_001875.2 + 12432 0.69 0.493265
Target:  5'- aGGccguUGCGUGCgc-GCCGCGGUGGaCGCc -3'
miRNA:   3'- aCC----ACGCACGaguCGGCGCUGCC-GCG- -5'
6992 5' -61 NC_001875.2 + 12760 0.66 0.630023
Target:  5'- aUGGgugGCGguuguUGUcCAGCCGgGGCGccGCGCa -3'
miRNA:   3'- -ACCa--CGC-----ACGaGUCGGCgCUGC--CGCG- -5'
6992 5' -61 NC_001875.2 + 13363 0.67 0.590139
Target:  5'- gGcGUGCGUGCU-AGCCGUuuuccACaGCGCg -3'
miRNA:   3'- aC-CACGCACGAgUCGGCGc----UGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.