miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 95015 0.65 0.514615
Target:  5'- aGUGGCGCgggcgcgcaacugCCGCgGCGCguaacGCGCa--- -3'
miRNA:   3'- gCGCCGCG-------------GGCGgCGCGa----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 114518 0.65 0.512719
Target:  5'- gGCGGCGCaaCCGCCaGCaGCUcuuuaacaucggcgGCGCUc-- -3'
miRNA:   3'- gCGCCGCG--GGCGG-CG-CGA--------------CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 31687 0.66 0.487425
Target:  5'- uGcCGGCGUggaCCGCCGC-UUGCGCg--- -3'
miRNA:   3'- gC-GCCGCG---GGCGGCGcGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 109860 0.66 0.496727
Target:  5'- uGCGcGCGUuuGCCaaGCUgGCGCUg-- -3'
miRNA:   3'- gCGC-CGCGggCGGcgCGA-CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 54958 0.66 0.459133
Target:  5'- gCGCGcGCGUuuGCCGgacgcguCGCUcGCGCUg-- -3'
miRNA:   3'- -GCGC-CGCGggCGGC-------GCGA-CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 29266 0.66 0.487425
Target:  5'- gCGCGGC-CgCCGaCCGCGCcggcgggGCGCg--- -3'
miRNA:   3'- -GCGCCGcG-GGC-GGCGCGa------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 118362 0.66 0.469074
Target:  5'- aGCGGCgGCCCGCUguacgaguGCGacCUGUGCa--- -3'
miRNA:   3'- gCGCCG-CGGGCGG--------CGC--GACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 115756 0.66 0.460032
Target:  5'- aGCGGCGUgCGCCaaaccgGCGCcgUGUGCg--- -3'
miRNA:   3'- gCGCCGCGgGCGG------CGCG--ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 68563 0.66 0.469074
Target:  5'- gGCGGCGgCgGUCGCGCaccGCGUg--- -3'
miRNA:   3'- gCGCCGCgGgCGGCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 85301 0.66 0.460032
Target:  5'- gGCGGCGCgggcgcgggcaUUGCCGCGg-GCGCUc-- -3'
miRNA:   3'- gCGCCGCG-----------GGCGGCGCgaCGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 67943 0.66 0.469074
Target:  5'- gGCGGCGCCaCGgCGCGCUu--CUUAc -3'
miRNA:   3'- gCGCCGCGG-GCgGCGCGAcgcGAAUu -5'
6993 3' -63.8 NC_001875.2 + 92515 0.66 0.469074
Target:  5'- aCG-GGCGCUCGUgCGCGCccgGCGCg--- -3'
miRNA:   3'- -GCgCCGCGGGCG-GCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 56463 0.66 0.496727
Target:  5'- gGCGGgGUCCGCgCGCGUguuggucaGCGCc--- -3'
miRNA:   3'- gCGCCgCGGGCG-GCGCGa-------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 20651 0.66 0.487425
Target:  5'- -aCGGCGCgCGCCGCcCaGCGCg--- -3'
miRNA:   3'- gcGCCGCGgGCGGCGcGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 62238 0.66 0.460032
Target:  5'- gGUGGaCGCgCGCCGCGUaaaGCGCc--- -3'
miRNA:   3'- gCGCC-GCGgGCGGCGCGa--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 100731 0.66 0.463638
Target:  5'- uGCGGCGCgCgGCaCGCGUucguuaaaaaacuuuUGCGCg--- -3'
miRNA:   3'- gCGCCGCG-GgCG-GCGCG---------------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 1034 0.66 0.496727
Target:  5'- gGCGGgGCCCGagGCGCacaGCGUUg-- -3'
miRNA:   3'- gCGCCgCGGGCggCGCGa--CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 82388 0.66 0.460032
Target:  5'- aCGCGGCGaCCGUCGCugagucGCUGaGCUa-- -3'
miRNA:   3'- -GCGCCGCgGGCGGCG------CGACgCGAauu -5'
6993 3' -63.8 NC_001875.2 + 71929 0.66 0.460032
Target:  5'- gGCGaGCGCCuUGaCCGCGCgcuccGCGCg--- -3'
miRNA:   3'- gCGC-CGCGG-GC-GGCGCGa----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 48519 0.66 0.496727
Target:  5'- gCGCGcCGCCCGgCGCGCgccccGCGggUAu -3'
miRNA:   3'- -GCGCcGCGGGCgGCGCGa----CGCgaAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.