miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 49996 0.72 0.212767
Target:  5'- aCGCGGCGCuuGUCGCGguugggGCGCg--- -3'
miRNA:   3'- -GCGCCGCGggCGGCGCga----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 99398 0.74 0.154932
Target:  5'- gGCGGCGCCagcggGUCGCGCaGCGCa--- -3'
miRNA:   3'- gCGCCGCGGg----CGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 65726 0.73 0.179617
Target:  5'- gGCGGCgccgccucgccGCCCGCCGCGCgggccucgGCGUa--- -3'
miRNA:   3'- gCGCCG-----------CGGGCGGCGCGa-------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 74025 0.73 0.183608
Target:  5'- cCGCGGCGCacaagauUGCCGCGCUaaaaaccGCGCUg-- -3'
miRNA:   3'- -GCGCCGCGg------GCGGCGCGA-------CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 52510 0.73 0.188591
Target:  5'- aGCGGCGCCaaaggcagCGCCGCGCUcaucgaaagcacGCGCc--- -3'
miRNA:   3'- gCGCCGCGG--------GCGGCGCGA------------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 26829 0.73 0.193225
Target:  5'- aCGUGGCGUuuUCGUCGCGCUGCuGCa--- -3'
miRNA:   3'- -GCGCCGCG--GGCGGCGCGACG-CGaauu -5'
6993 3' -63.8 NC_001875.2 + 72222 0.72 0.197958
Target:  5'- aCGCGGCGUCCGCCaauccgccaaaGCGCccGUGCUc-- -3'
miRNA:   3'- -GCGCCGCGGGCGG-----------CGCGa-CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 45461 0.72 0.202792
Target:  5'- gCGCucGGCGCCCgcaGCCGCGCgucuaGCGCg--- -3'
miRNA:   3'- -GCG--CCGCGGG---CGGCGCGa----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 11935 0.72 0.212767
Target:  5'- gCGCGGCGCgCCGaCUGUGC-GCGCg--- -3'
miRNA:   3'- -GCGCCGCG-GGC-GGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 37117 0.74 0.15264
Target:  5'- gCGCGGCGCCgCGCCGgCGUuugcgucuuuccgcgUGCGCa--- -3'
miRNA:   3'- -GCGCCGCGG-GCGGC-GCG---------------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 30955 0.75 0.140225
Target:  5'- uCGCcauGGCGCCCacGCgCGCGCUGCGCc--- -3'
miRNA:   3'- -GCG---CCGCGGG--CG-GCGCGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 95738 0.75 0.126807
Target:  5'- aGCGGCGCcgCCGCCGCGUgcugccGCGCg--- -3'
miRNA:   3'- gCGCCGCG--GGCGGCGCGa-----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 74154 0.81 0.04738
Target:  5'- gCGCGGCGCCCGCCGCcGCca-GCUUGGa -3'
miRNA:   3'- -GCGCCGCGGGCGGCG-CGacgCGAAUU- -5'
6993 3' -63.8 NC_001875.2 + 40692 0.78 0.077925
Target:  5'- aCGCGGCGCauuuggaaCCGCCGCGC-GCGCg--- -3'
miRNA:   3'- -GCGCCGCG--------GGCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 4525 0.77 0.091005
Target:  5'- aGCGGCGCaCCGCCG-GCUGCGgUUc- -3'
miRNA:   3'- gCGCCGCG-GGCGGCgCGACGCgAAuu -5'
6993 3' -63.8 NC_001875.2 + 81315 0.77 0.091948
Target:  5'- gGCGGCGCCUccuccucgucaucguGCCGCGCgGCGCg--- -3'
miRNA:   3'- gCGCCGCGGG---------------CGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 126342 0.77 0.100857
Target:  5'- gCGCGuGCGCCgGUCGUGCUGUGCa--- -3'
miRNA:   3'- -GCGC-CGCGGgCGGCGCGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 88244 0.76 0.103472
Target:  5'- aGCGGCGCgCGCCGcCGCUGcCGCc--- -3'
miRNA:   3'- gCGCCGCGgGCGGC-GCGAC-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 110757 0.76 0.108896
Target:  5'- gCGCGGCGaCCGCCGcCGC-GCGCUUu- -3'
miRNA:   3'- -GCGCCGCgGGCGGC-GCGaCGCGAAuu -5'
6993 3' -63.8 NC_001875.2 + 110646 0.75 0.123643
Target:  5'- gGUGGCGCUgGCCGUGCcGCGCg--- -3'
miRNA:   3'- gCGCCGCGGgCGGCGCGaCGCGaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.