miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 98809 1.05 0.000735
Target:  5'- gCGCGGCGCCCGCCGCGCUGCGCUUAAg -3'
miRNA:   3'- -GCGCCGCGGGCGGCGCGACGCGAAUU- -5'
6993 3' -63.8 NC_001875.2 + 74154 0.81 0.04738
Target:  5'- gCGCGGCGCCCGCCGCcGCca-GCUUGGa -3'
miRNA:   3'- -GCGCCGCGGGCGGCG-CGacgCGAAUU- -5'
6993 3' -63.8 NC_001875.2 + 98922 0.79 0.063261
Target:  5'- uCGCGGCGCCgGuuGCGCgUGCGCg--- -3'
miRNA:   3'- -GCGCCGCGGgCggCGCG-ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 99057 0.79 0.063261
Target:  5'- gCGCGGCGCCCGCCcaCGCcGCGCg--- -3'
miRNA:   3'- -GCGCCGCGGGCGGc-GCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 32422 0.79 0.068418
Target:  5'- uCGCGGCGCUgGCCaacaauGCGCUGCGCg--- -3'
miRNA:   3'- -GCGCCGCGGgCGG------CGCGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 40692 0.78 0.077925
Target:  5'- aCGCGGCGCauuuggaaCCGCCGCGC-GCGCg--- -3'
miRNA:   3'- -GCGCCGCG--------GGCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 69363 0.78 0.082072
Target:  5'- aGCGGCGUgCGCC-CGCUGCGCg--- -3'
miRNA:   3'- gCGCCGCGgGCGGcGCGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 4525 0.77 0.091005
Target:  5'- aGCGGCGCaCCGCCG-GCUGCGgUUc- -3'
miRNA:   3'- gCGCCGCG-GGCGGCgCGACGCgAAuu -5'
6993 3' -63.8 NC_001875.2 + 81315 0.77 0.091948
Target:  5'- gGCGGCGCCUccuccucgucaucguGCCGCGCgGCGCg--- -3'
miRNA:   3'- gCGCCGCGGG---------------CGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 21329 0.77 0.098051
Target:  5'- gCGCGGgGCCCGCCuuguugacgagcaGCGCcgUGUGCUUGAc -3'
miRNA:   3'- -GCGCCgCGGGCGG-------------CGCG--ACGCGAAUU- -5'
6993 3' -63.8 NC_001875.2 + 126342 0.77 0.100857
Target:  5'- gCGCGuGCGCCgGUCGUGCUGUGCa--- -3'
miRNA:   3'- -GCGC-CGCGGgCGGCGCGACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 52720 0.77 0.101635
Target:  5'- cCGCGGCGCCCGCCGCcgacaacGCcguggccaaguuuuaUGCGCa--- -3'
miRNA:   3'- -GCGCCGCGGGCGGCG-------CG---------------ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 88244 0.76 0.103472
Target:  5'- aGCGGCGCgCGCCGcCGCUGcCGCc--- -3'
miRNA:   3'- gCGCCGCGgGCGGC-GCGAC-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 110757 0.76 0.108896
Target:  5'- gCGCGGCGaCCGCCGcCGC-GCGCUUu- -3'
miRNA:   3'- -GCGCCGCgGGCGGC-GCGaCGCGAAuu -5'
6993 3' -63.8 NC_001875.2 + 95430 0.76 0.114586
Target:  5'- cCGCGGCGCCgGCCaGCG-UGCGCg--- -3'
miRNA:   3'- -GCGCCGCGGgCGG-CGCgACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 110646 0.75 0.123643
Target:  5'- gGUGGCGCUgGCCGUGCcGCGCg--- -3'
miRNA:   3'- gCGCCGCGGgCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 9708 0.75 0.126807
Target:  5'- uCGUGcGCGCCgGCCGCGCcGCGCc--- -3'
miRNA:   3'- -GCGC-CGCGGgCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 84170 0.75 0.126807
Target:  5'- gCGCGGCGCgCCgcgGCCGCGUccgUGCGUUUGc -3'
miRNA:   3'- -GCGCCGCG-GG---CGGCGCG---ACGCGAAUu -5'
6993 3' -63.8 NC_001875.2 + 95738 0.75 0.126807
Target:  5'- aGCGGCGCcgCCGCCGCGUgcugccGCGCg--- -3'
miRNA:   3'- gCGCCGCG--GGCGGCGCGa-----CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 33038 0.75 0.130046
Target:  5'- gCGCGGCGggCGCCGCGCcGCGCg--- -3'
miRNA:   3'- -GCGCCGCggGCGGCGCGaCGCGaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.