miRNA display CGI


Results 1 - 20 of 213 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 3' -63.8 NC_001875.2 + 553 0.71 0.233984
Target:  5'- gCGCGGCGUCCaGCUGCGCU-UGCa--- -3'
miRNA:   3'- -GCGCCGCGGG-CGGCGCGAcGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 1034 0.66 0.496727
Target:  5'- gGCGGgGCCCGagGCGCacaGCGUUg-- -3'
miRNA:   3'- gCGCCgCGGGCggCGCGa--CGCGAauu -5'
6993 3' -63.8 NC_001875.2 + 1896 0.7 0.294814
Target:  5'- aGCGGCGaCCCuGCUuuucggguGCGCacGCGCUUGAa -3'
miRNA:   3'- gCGCCGC-GGG-CGG--------CGCGa-CGCGAAUU- -5'
6993 3' -63.8 NC_001875.2 + 2295 0.67 0.442231
Target:  5'- gCGCGcGCGCCgugGCCGCGC-GCaGCUc-- -3'
miRNA:   3'- -GCGC-CGCGGg--CGGCGCGaCG-CGAauu -5'
6993 3' -63.8 NC_001875.2 + 2663 0.71 0.251041
Target:  5'- uGCGGCGCCgGCgGCGCcugGgGCa--- -3'
miRNA:   3'- gCGCCGCGGgCGgCGCGa--CgCGaauu -5'
6993 3' -63.8 NC_001875.2 + 3133 0.73 0.179617
Target:  5'- gGCGGCgaaGCCCGCUGCGCgGaCGCg--- -3'
miRNA:   3'- gCGCCG---CGGGCGGCGCGaC-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 4525 0.77 0.091005
Target:  5'- aGCGGCGCaCCGCCG-GCUGCGgUUc- -3'
miRNA:   3'- gCGCCGCG-GGCGGCgCGACGCgAAuu -5'
6993 3' -63.8 NC_001875.2 + 5752 0.68 0.37437
Target:  5'- aCGCGGCGCuuGCuuugcacCGCGUUcaGCGCg--- -3'
miRNA:   3'- -GCGCCGCGggCG-------GCGCGA--CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 7934 0.66 0.506108
Target:  5'- gGUGGCGCUCaauucgaacgGCC-CGUUGCGUUUGu -3'
miRNA:   3'- gCGCCGCGGG----------CGGcGCGACGCGAAUu -5'
6993 3' -63.8 NC_001875.2 + 9635 0.67 0.416278
Target:  5'- uGCGuGCGCgCGCCGUGC-GUGUUUc- -3'
miRNA:   3'- gCGC-CGCGgGCGGCGCGaCGCGAAuu -5'
6993 3' -63.8 NC_001875.2 + 9708 0.75 0.126807
Target:  5'- uCGUGcGCGCCgGCCGCGCcGCGCc--- -3'
miRNA:   3'- -GCGC-CGCGGgCGGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 10456 0.71 0.228518
Target:  5'- aCGCGGCGCggCGgCGCGCUcagugaaugGCGCUUGc -3'
miRNA:   3'- -GCGCCGCGg-GCgGCGCGA---------CGCGAAUu -5'
6993 3' -63.8 NC_001875.2 + 10884 0.68 0.399502
Target:  5'- gGUGGCG-CUGCCGCGCaacguguugGCGCa--- -3'
miRNA:   3'- gCGCCGCgGGCGGCGCGa--------CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 11935 0.72 0.212767
Target:  5'- gCGCGGCGCgCCGaCUGUGC-GCGCg--- -3'
miRNA:   3'- -GCGCCGCG-GGC-GGCGCGaCGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 12766 0.66 0.496727
Target:  5'- gGCGGUuguuguccaGCCggggCGCCGCGCacaUGCGCa--- -3'
miRNA:   3'- gCGCCG---------CGG----GCGGCGCG---ACGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 13909 0.68 0.359505
Target:  5'- gGCGGCGCgCaCGCCG-GCcUGCaGCUUGc -3'
miRNA:   3'- gCGCCGCG-G-GCGGCgCG-ACG-CGAAUu -5'
6993 3' -63.8 NC_001875.2 + 17333 0.7 0.288214
Target:  5'- gGCGGuUGCgCCGCCGCGCgaccGCGUc--- -3'
miRNA:   3'- gCGCC-GCG-GGCGGCGCGa---CGCGaauu -5'
6993 3' -63.8 NC_001875.2 + 18212 0.68 0.399502
Target:  5'- aCGCGGCGCCguCGCCGCucuuGCcGcCGCg--- -3'
miRNA:   3'- -GCGCCGCGG--GCGGCG----CGaC-GCGaauu -5'
6993 3' -63.8 NC_001875.2 + 19872 0.68 0.351849
Target:  5'- uCGCGGCGCgggCGCCGUuugcgaaacGCgUGCGCUUu- -3'
miRNA:   3'- -GCGCCGCGg--GCGGCG---------CG-ACGCGAAuu -5'
6993 3' -63.8 NC_001875.2 + 19968 0.68 0.375164
Target:  5'- gGcCGGCGCCuCGCCGUuGCUGaCGUg--- -3'
miRNA:   3'- gC-GCCGCGG-GCGGCG-CGAC-GCGaauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.