miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 59353 0.66 0.982766
Target:  5'- ----aCAACAGaaACCGCGAguuuGCGCAAg -3'
miRNA:   3'- aaaaaGUUGUUgcUGGCGCU----CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 124662 0.66 0.986583
Target:  5'- ---cUCGGaauguCGGCGAUCGCGuccAGCGCAAa -3'
miRNA:   3'- aaaaAGUU-----GUUGCUGGCGC---UCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 125334 0.66 0.984765
Target:  5'- ---gUgGACGGCGGCCaGCGuguuGGCGCGg -3'
miRNA:   3'- aaaaAgUUGUUGCUGG-CGC----UCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 84998 0.66 0.989715
Target:  5'- aUUUcCAGCAGCGugCGCaacguGUGCAAc -3'
miRNA:   3'- aAAAaGUUGUUGCugGCGcu---CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 31965 0.66 0.989715
Target:  5'- ----gCGACGACGAaCGCGuguGGCGCGc -3'
miRNA:   3'- aaaaaGUUGUUGCUgGCGC---UCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 27222 0.66 0.989715
Target:  5'- ---gUCGGCGcacACGGCCGaCGAGgGUAu -3'
miRNA:   3'- aaaaAGUUGU---UGCUGGC-GCUCgCGUu -5'
6993 5' -50.2 NC_001875.2 + 85300 0.66 0.982129
Target:  5'- -----gGGCGGCGcgggcgcgggcauuGCCGCGGGCGCu- -3'
miRNA:   3'- aaaaagUUGUUGC--------------UGGCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 47672 0.66 0.986583
Target:  5'- -----gGAC-GCGGCCGCG-GCGCGc -3'
miRNA:   3'- aaaaagUUGuUGCUGGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 58282 0.66 0.986583
Target:  5'- ---gUUGACGAaGugCGCGAGCuGCAAg -3'
miRNA:   3'- aaaaAGUUGUUgCugGCGCUCG-CGUU- -5'
6993 5' -50.2 NC_001875.2 + 61735 0.66 0.989715
Target:  5'- ---gUCGGC--CGGCUGCG-GCGCAAa -3'
miRNA:   3'- aaaaAGUUGuuGCUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 37752 0.66 0.984765
Target:  5'- --aUUUAACAaugaACGugCaCGAGCGCAu -3'
miRNA:   3'- aaaAAGUUGU----UGCugGcGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 23744 0.66 0.989715
Target:  5'- ---cUCAuguguAUGGCCGUGAGUGCGGu -3'
miRNA:   3'- aaaaAGUugu--UGCUGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 40846 0.66 0.988842
Target:  5'- -----aGACGGCGcucgccaagacgcgcACCGCGGGCGCc- -3'
miRNA:   3'- aaaaagUUGUUGC---------------UGGCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 86047 0.66 0.986409
Target:  5'- cUUUUCcACAACGACCGCcacguccuuguccGAGUaGCGu -3'
miRNA:   3'- aAAAAGuUGUUGCUGGCG-------------CUCG-CGUu -5'
6993 5' -50.2 NC_001875.2 + 31689 0.66 0.988229
Target:  5'- ----cCGGCGugGACCGCcgcuuGCGCGc -3'
miRNA:   3'- aaaaaGUUGUugCUGGCGcu---CGCGUu -5'
6993 5' -50.2 NC_001875.2 + 77278 0.66 0.986583
Target:  5'- -----aAGCGGCcGCCGCG-GCGCAGu -3'
miRNA:   3'- aaaaagUUGUUGcUGGCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 3960 0.66 0.986583
Target:  5'- ---gUCAACAACGacGCCGCGcuugccaaAGCGUu- -3'
miRNA:   3'- aaaaAGUUGUUGC--UGGCGC--------UCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 21679 0.66 0.984765
Target:  5'- ----gCGACGcCGcCCGaCGAGCGCGAc -3'
miRNA:   3'- aaaaaGUUGUuGCuGGC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 131501 0.66 0.984765
Target:  5'- ---aUCGACAgucuGCGGCgCGCG-GUGCAGc -3'
miRNA:   3'- aaaaAGUUGU----UGCUG-GCGCuCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 53678 0.66 0.982766
Target:  5'- ---aUCAagACGGCG-CCGCGcAGCGCc- -3'
miRNA:   3'- aaaaAGU--UGUUGCuGGCGC-UCGCGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.