miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 1341 0.7 0.892738
Target:  5'- ---gUCAGCGGCGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1437 0.7 0.892738
Target:  5'- ---gUCAGCGGCGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1503 0.76 0.61834
Target:  5'- ---gUCAGCGACGACCcugccuuuuggguGCGGGCGCu- -3'
miRNA:   3'- aaaaAGUUGUUGCUGG-------------CGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 1569 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1635 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1701 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1761 0.7 0.899769
Target:  5'- ---cUCAGCGGCGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1827 0.67 0.978182
Target:  5'- ---gUCAGCAACGACCcugcuuuuCGGGUGUGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1893 0.68 0.966415
Target:  5'- ---gUCAGCGGCGACCcugcuuuuCGGGUGCGc -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 2547 0.72 0.808963
Target:  5'- ---gUgAACAACGGCgCGuCGGGCGCAAa -3'
miRNA:   3'- aaaaAgUUGUUGCUG-GC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 2793 0.68 0.959098
Target:  5'- --cUUCgGGCAugaugaggucugGCGAgCGCGAGCGCGg -3'
miRNA:   3'- aaaAAG-UUGU------------UGCUgGCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 3960 0.66 0.986583
Target:  5'- ---gUCAACAACGacGCCGCGcuugccaaAGCGUu- -3'
miRNA:   3'- aaaaAGUUGUUGC--UGGCGC--------UCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 15824 0.71 0.853736
Target:  5'- ----cCAACAGCGuGCCGCGAGacuGCAAc -3'
miRNA:   3'- aaaaaGUUGUUGC-UGGCGCUCg--CGUU- -5'
6993 5' -50.2 NC_001875.2 + 16549 0.69 0.930844
Target:  5'- ----aCAAUGACGugCGCG-GCGCGc -3'
miRNA:   3'- aaaaaGUUGUUGCugGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 16909 0.68 0.950755
Target:  5'- ---aUCGACGACGGCgCGggccucguguuUGAGCGCAu -3'
miRNA:   3'- aaaaAGUUGUUGCUG-GC-----------GCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 21679 0.66 0.984765
Target:  5'- ----gCGACGcCGcCCGaCGAGCGCGAc -3'
miRNA:   3'- aaaaaGUUGUuGCuGGC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 23744 0.66 0.989715
Target:  5'- ---cUCAuguguAUGGCCGUGAGUGCGGu -3'
miRNA:   3'- aaaaAGUugu--UGCUGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 27222 0.66 0.989715
Target:  5'- ---gUCGGCGcacACGGCCGaCGAGgGUAu -3'
miRNA:   3'- aaaaAGUUGU---UGCUGGC-GCUCgCGUu -5'
6993 5' -50.2 NC_001875.2 + 29424 0.69 0.941345
Target:  5'- ---cUCGGCAACG---GCGAGCGCGAc -3'
miRNA:   3'- aaaaAGUUGUUGCuggCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 29577 0.7 0.892738
Target:  5'- --aUUCuGCAACG-CgCGCGAGCGCu- -3'
miRNA:   3'- aaaAAGuUGUUGCuG-GCGCUCGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.