miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 39042 0.68 0.954639
Target:  5'- ---aUCGGCGGCGgcgcuguACCGCaAGCGCAu -3'
miRNA:   3'- aaaaAGUUGUUGC-------UGGCGcUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 29577 0.7 0.892738
Target:  5'- --aUUCuGCAACG-CgCGCGAGCGCu- -3'
miRNA:   3'- aaaAAGuUGUUGCuG-GCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 74367 0.7 0.899769
Target:  5'- ----aCGGCGugcGCGGCCGCG-GCGCGu -3'
miRNA:   3'- aaaaaGUUGU---UGCUGGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 114679 0.7 0.912385
Target:  5'- ---gUCAGCGGCGACCGUgcuuuucGGGUGCc- -3'
miRNA:   3'- aaaaAGUUGUUGCUGGCG-------CUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 39323 0.69 0.924598
Target:  5'- ----cCGGCGGCGugCGCGcgcugcaGGCGCAGc -3'
miRNA:   3'- aaaaaGUUGUUGCugGCGC-------UCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 16549 0.69 0.930844
Target:  5'- ----aCAAUGACGugCGCG-GCGCGc -3'
miRNA:   3'- aaaaaGUUGUUGCugGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 113610 0.69 0.930844
Target:  5'- ---gUCGGCGGCgGGCCGCG-GCGgCAAg -3'
miRNA:   3'- aaaaAGUUGUUG-CUGGCGCuCGC-GUU- -5'
6993 5' -50.2 NC_001875.2 + 32049 0.68 0.950755
Target:  5'- ----aCAugAGCGugCGCGAcGCGUAc -3'
miRNA:   3'- aaaaaGUugUUGCugGCGCU-CGCGUu -5'
6993 5' -50.2 NC_001875.2 + 16909 0.68 0.950755
Target:  5'- ---aUCGACGACGGCgCGggccucguguuUGAGCGCAu -3'
miRNA:   3'- aaaaAGUUGUUGCUG-GC-----------GCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 72550 0.71 0.87789
Target:  5'- -----aAACAACGggcGCUGCGGGCGCGGg -3'
miRNA:   3'- aaaaagUUGUUGC---UGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 91446 0.71 0.870083
Target:  5'- ---cUgAGCGGCGGCgCGUGGGCGCGc -3'
miRNA:   3'- aaaaAgUUGUUGCUG-GCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 126317 0.71 0.862029
Target:  5'- ---cUCAACGGCGGCCGgCGuaaacuGCGCGc -3'
miRNA:   3'- aaaaAGUUGUUGCUGGC-GCu-----CGCGUu -5'
6993 5' -50.2 NC_001875.2 + 69144 0.77 0.553975
Target:  5'- gUUUUUCAAaugccuCAACGAUCGCGAGgCGCAGc -3'
miRNA:   3'- -AAAAAGUU------GUUGCUGGCGCUC-GCGUU- -5'
6993 5' -50.2 NC_001875.2 + 63717 0.73 0.769755
Target:  5'- ---gUCGgucGCGGCGACgGCGGGCGCu- -3'
miRNA:   3'- aaaaAGU---UGUUGCUGgCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 2547 0.72 0.808963
Target:  5'- ---gUgAACAACGGCgCGuCGGGCGCAAa -3'
miRNA:   3'- aaaaAgUUGUUGCUG-GC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 117289 0.72 0.827497
Target:  5'- --cUUC-ACGAUGGCCGCGuGCGCc- -3'
miRNA:   3'- aaaAAGuUGUUGCUGGCGCuCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 97723 0.72 0.827497
Target:  5'- --cUUCGcGCua-GACCGCGAGCGCGc -3'
miRNA:   3'- aaaAAGU-UGuugCUGGCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 93609 0.72 0.836461
Target:  5'- ----aCGACuacuggGGgGACCGCGAGCGCAu -3'
miRNA:   3'- aaaaaGUUG------UUgCUGGCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 90284 0.72 0.836461
Target:  5'- ---gUCAugAACGAgCGCaAGCGCAAg -3'
miRNA:   3'- aaaaAGUugUUGCUgGCGcUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 15824 0.71 0.853736
Target:  5'- ----cCAACAGCGuGCCGCGAGacuGCAAc -3'
miRNA:   3'- aaaaaGUUGUUGC-UGGCGCUCg--CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.