miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6993 5' -50.2 NC_001875.2 + 98843 1.03 0.015446
Target:  5'- cUUUUUCAACAACGACCGCGAGCGCAAc -3'
miRNA:   3'- -AAAAAGUUGUUGCUGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 50280 0.81 0.358446
Target:  5'- ----aCAGCAAC-ACCGCGAGCGCGAu -3'
miRNA:   3'- aaaaaGUUGUUGcUGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 69144 0.77 0.553975
Target:  5'- gUUUUUCAAaugccuCAACGAUCGCGAGgCGCAGc -3'
miRNA:   3'- -AAAAAGUU------GUUGCUGGCGCUC-GCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1503 0.76 0.61834
Target:  5'- ---gUCAGCGACGACCcugccuuuuggguGCGGGCGCu- -3'
miRNA:   3'- aaaaAGUUGUUGCUGG-------------CGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 89358 0.75 0.663417
Target:  5'- ----aCGACGGCGugCGCGuGCGCGu -3'
miRNA:   3'- aaaaaGUUGUUGCugGCGCuCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 63717 0.73 0.769755
Target:  5'- ---gUCGgucGCGGCGACgGCGGGCGCu- -3'
miRNA:   3'- aaaaAGU---UGUUGCUGgCGCUCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 2547 0.72 0.808963
Target:  5'- ---gUgAACAACGGCgCGuCGGGCGCAAa -3'
miRNA:   3'- aaaaAgUUGUUGCUG-GC-GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 64879 0.72 0.808963
Target:  5'- ----aCAGCAACc-CCGUGAGCGCGAa -3'
miRNA:   3'- aaaaaGUUGUUGcuGGCGCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 97723 0.72 0.827497
Target:  5'- --cUUCGcGCua-GACCGCGAGCGCGc -3'
miRNA:   3'- aaaAAGU-UGuugCUGGCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 117289 0.72 0.827497
Target:  5'- --cUUC-ACGAUGGCCGCGuGCGCc- -3'
miRNA:   3'- aaaAAGuUGUUGCUGGCGCuCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 93609 0.72 0.836461
Target:  5'- ----aCGACuacuggGGgGACCGCGAGCGCAu -3'
miRNA:   3'- aaaaaGUUG------UUgCUGGCGCUCGCGUu -5'
6993 5' -50.2 NC_001875.2 + 90284 0.72 0.836461
Target:  5'- ---gUCAugAACGAgCGCaAGCGCAAg -3'
miRNA:   3'- aaaaAGUugUUGCUgGCGcUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 49458 0.72 0.84521
Target:  5'- ---cUCAGCGACGgucGCCGCGuuGUGCAGa -3'
miRNA:   3'- aaaaAGUUGUUGC---UGGCGCu-CGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 122168 0.72 0.84521
Target:  5'- uUUUUUCGACAGCG-CCGCGcAGCuguuuGCAu -3'
miRNA:   3'- -AAAAAGUUGUUGCuGGCGC-UCG-----CGUu -5'
6993 5' -50.2 NC_001875.2 + 31236 0.71 0.853736
Target:  5'- -----aAACAGCGGCCGCGgccGGCGCc- -3'
miRNA:   3'- aaaaagUUGUUGCUGGCGC---UCGCGuu -5'
6993 5' -50.2 NC_001875.2 + 1569 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1635 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 1701 0.71 0.853736
Target:  5'- ---gUCAGCGACGACCcugcuuuuCGGGUGCGAa -3'
miRNA:   3'- aaaaAGUUGUUGCUGGc-------GCUCGCGUU- -5'
6993 5' -50.2 NC_001875.2 + 15824 0.71 0.853736
Target:  5'- ----cCAACAGCGuGCCGCGAGacuGCAAc -3'
miRNA:   3'- aaaaaGUUGUUGC-UGGCGCUCg--CGUU- -5'
6993 5' -50.2 NC_001875.2 + 126317 0.71 0.862029
Target:  5'- ---cUCAACGGCGGCCGgCGuaaacuGCGCGc -3'
miRNA:   3'- aaaaAGUUGUUGCUGGC-GCu-----CGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.