miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 3' -53.1 NC_001875.2 + 29084 0.66 0.970756
Target:  5'- aGCGcugcAGCGcUCGUGcaaaggCCGCGCAgACUUu -3'
miRNA:   3'- -CGCu---UCGC-AGCACa-----GGCGCGU-UGAAc -5'
6994 3' -53.1 NC_001875.2 + 83321 0.66 0.970756
Target:  5'- cGCGggGCG-CGcG-CCGgGCGGCg-- -3'
miRNA:   3'- -CGCuuCGCaGCaCaGGCgCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 75600 0.66 0.967708
Target:  5'- gGCGAuGGCGUCGgcGUUgGCGuCGGCgUUGg -3'
miRNA:   3'- -CGCU-UCGCAGCa-CAGgCGC-GUUG-AAC- -5'
6994 3' -53.1 NC_001875.2 + 50480 0.66 0.967708
Target:  5'- aGCGAcGCGgccggCGcGUgCGCGCGGCa-- -3'
miRNA:   3'- -CGCUuCGCa----GCaCAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 113357 0.66 0.967708
Target:  5'- cGCGGcuGCGUCGcUG-CgGCGCGGCg-- -3'
miRNA:   3'- -CGCUu-CGCAGC-ACaGgCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 43324 0.66 0.964441
Target:  5'- cGCGGgucGGCGUgGUugccgCCGCGCAccacguACUUGc -3'
miRNA:   3'- -CGCU---UCGCAgCAca---GGCGCGU------UGAAC- -5'
6994 3' -53.1 NC_001875.2 + 39080 0.66 0.964441
Target:  5'- uGCGccgcGGCGUCGUG-CUGUGcCAACg-- -3'
miRNA:   3'- -CGCu---UCGCAGCACaGGCGC-GUUGaac -5'
6994 3' -53.1 NC_001875.2 + 92237 0.66 0.96095
Target:  5'- aCGAAGCGU--UGUUCGCG-GGCUUGc -3'
miRNA:   3'- cGCUUCGCAgcACAGGCGCgUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 90961 0.66 0.958745
Target:  5'- cGCGAAGCGcgCGUGcaccaggauggcgcCCGCGguGCg-- -3'
miRNA:   3'- -CGCUUCGCa-GCACa-------------GGCGCguUGaac -5'
6994 3' -53.1 NC_001875.2 + 50014 0.66 0.957228
Target:  5'- uUGggGCGcgCGUGgucgCCGgGCGGCg-- -3'
miRNA:   3'- cGCuuCGCa-GCACa---GGCgCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 41529 0.66 0.957228
Target:  5'- gGCGgcGuUGUCGUGaCCGacgccUGCAACUUGc -3'
miRNA:   3'- -CGCuuC-GCAGCACaGGC-----GCGUUGAAC- -5'
6994 3' -53.1 NC_001875.2 + 30925 0.66 0.957228
Target:  5'- aGCGAGcGCGgcgagCGUcUCCGCGC-GCUg- -3'
miRNA:   3'- -CGCUU-CGCa----GCAcAGGCGCGuUGAac -5'
6994 3' -53.1 NC_001875.2 + 5572 0.66 0.957228
Target:  5'- gGCGAcuguGCGguuuugCGUGUCgCGuCGCAACa-- -3'
miRNA:   3'- -CGCUu---CGCa-----GCACAG-GC-GCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 33058 0.66 0.957228
Target:  5'- cGCGGauAGCGU----UCCGCGCGGCUc- -3'
miRNA:   3'- -CGCU--UCGCAgcacAGGCGCGUUGAac -5'
6994 3' -53.1 NC_001875.2 + 14570 0.66 0.957228
Target:  5'- cGUGAAGCGcaUCGg--CCGCgGCAGCg-- -3'
miRNA:   3'- -CGCUUCGC--AGCacaGGCG-CGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 114983 0.67 0.953272
Target:  5'- -aGggGCGUacaCGUGcgcCCGCGUAGCg-- -3'
miRNA:   3'- cgCuuCGCA---GCACa--GGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 53150 0.67 0.953272
Target:  5'- uGCGcGGUGUUGgccacCCGCGCAAUUUa -3'
miRNA:   3'- -CGCuUCGCAGCaca--GGCGCGUUGAAc -5'
6994 3' -53.1 NC_001875.2 + 86147 0.67 0.946441
Target:  5'- cGCGAGuCGUUGUGUucgucuuucaaaagcCCGCGCAGgUUu -3'
miRNA:   3'- -CGCUUcGCAGCACA---------------GGCGCGUUgAAc -5'
6994 3' -53.1 NC_001875.2 + 40480 0.67 0.944636
Target:  5'- uGCcGGGCGUCaUGU-CGCGCAACg-- -3'
miRNA:   3'- -CGcUUCGCAGcACAgGCGCGUUGaac -5'
6994 3' -53.1 NC_001875.2 + 110736 0.67 0.939951
Target:  5'- cGCGggGCG-CGUG-CaguuuaaGCGCGGCg-- -3'
miRNA:   3'- -CGCuuCGCaGCACaGg------CGCGUUGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.