miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 5' -57.5 NC_001875.2 + 102442 0.66 0.801976
Target:  5'- cGCCGGGuUGGCgcccuUGCCGC-CCGGa -3'
miRNA:   3'- -CGGUUC-ACCGguuucGCGGCGuGGCC- -5'
6994 5' -57.5 NC_001875.2 + 70192 0.66 0.810786
Target:  5'- aGCCGGGcGGCgAcggcgaccacuGGGCGCCcgagGCGCCGc -3'
miRNA:   3'- -CGGUUCaCCGgU-----------UUCGCGG----CGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 100114 0.66 0.844339
Target:  5'- cGCCGcG-GGCCAAcuuCGCCgaaaguaauGCGCCGGc -3'
miRNA:   3'- -CGGUuCaCCGGUUuc-GCGG---------CGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 74655 0.66 0.835397
Target:  5'- uGCCA--UGGCCGGGGCugggcgaGCUGCGCUu- -3'
miRNA:   3'- -CGGUucACCGGUUUCG-------CGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 42328 0.66 0.818578
Target:  5'- cGCCcAGcGGCCccaggcgGAAGCGCaguCGCAgCGGc -3'
miRNA:   3'- -CGGuUCaCCGG-------UUUCGCG---GCGUgGCC- -5'
6994 5' -57.5 NC_001875.2 + 37429 0.66 0.819436
Target:  5'- gGCCGuggcgcagucGGcGGCCAAauAGcCGCCGCAauGGa -3'
miRNA:   3'- -CGGU----------UCaCCGGUU--UC-GCGGCGUggCC- -5'
6994 5' -57.5 NC_001875.2 + 42575 0.66 0.836219
Target:  5'- cGCCAGGUcGGCgcacgcgcgcguCAGcucGGCGCUggGCACCGc -3'
miRNA:   3'- -CGGUUCA-CCG------------GUU---UCGCGG--CGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 88904 0.66 0.801976
Target:  5'- cGUCAAGcUGGCCuuuggcGCGCUGCAauaCGa -3'
miRNA:   3'- -CGGUUC-ACCGGuuu---CGCGGCGUg--GCc -5'
6994 5' -57.5 NC_001875.2 + 31590 0.66 0.836219
Target:  5'- --aGGGUGGUguccGGCGCCGUGCCGu -3'
miRNA:   3'- cggUUCACCGguu-UCGCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 64019 0.66 0.801976
Target:  5'- cGCCAcuUGGCCGAAaa-CCGCucguCCGGg -3'
miRNA:   3'- -CGGUucACCGGUUUcgcGGCGu---GGCC- -5'
6994 5' -57.5 NC_001875.2 + 53895 0.66 0.810786
Target:  5'- cGCCGc--GGCgCAAAuaauugugggcGCGCCGUugCGGg -3'
miRNA:   3'- -CGGUucaCCG-GUUU-----------CGCGGCGugGCC- -5'
6994 5' -57.5 NC_001875.2 + 90352 0.66 0.805519
Target:  5'- gGCCGAccGGCCGgcgcagaccacacaaGAcacgccgcgcGCGCCGCaACCGGc -3'
miRNA:   3'- -CGGUUcaCCGGU---------------UU----------CGCGGCG-UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 1846 0.66 0.836219
Target:  5'- cGCCAauGGUagauuuGGCCAcGAGCauGCCGcCGCCGc -3'
miRNA:   3'- -CGGU--UCA------CCGGU-UUCG--CGGC-GUGGCc -5'
6994 5' -57.5 NC_001875.2 + 67128 0.66 0.819436
Target:  5'- cGCCu--UGGCC--AGCGCCguguuGCugCGGc -3'
miRNA:   3'- -CGGuucACCGGuuUCGCGG-----CGugGCC- -5'
6994 5' -57.5 NC_001875.2 + 105251 0.66 0.819436
Target:  5'- cGCCAGGUGuGC--GGGCGCUGUuucACCa- -3'
miRNA:   3'- -CGGUUCAC-CGguUUCGCGGCG---UGGcc -5'
6994 5' -57.5 NC_001875.2 + 1029 0.66 0.810786
Target:  5'- cGCguGGcggGGcCCGAGGCGCacaGCGuuGGg -3'
miRNA:   3'- -CGguUCa--CC-GGUUUCGCGg--CGUggCC- -5'
6994 5' -57.5 NC_001875.2 + 97214 0.66 0.836219
Target:  5'- uGUCAGGUGcGCCAuGGUGCCGguUa-- -3'
miRNA:   3'- -CGGUUCAC-CGGUuUCGCGGCguGgcc -5'
6994 5' -57.5 NC_001875.2 + 20421 0.66 0.810786
Target:  5'- aCCAAcGUGGCCGAGGUGCaggaaaauUGCgACCa- -3'
miRNA:   3'- cGGUU-CACCGGUUUCGCG--------GCG-UGGcc -5'
6994 5' -57.5 NC_001875.2 + 118304 0.66 0.810786
Target:  5'- cGCCGAcagGGUCGAGGCGgCCG-GCCGc -3'
miRNA:   3'- -CGGUUca-CCGGUUUCGC-GGCgUGGCc -5'
6994 5' -57.5 NC_001875.2 + 41824 0.66 0.819436
Target:  5'- cGCCGc--GGCCAGuugcgcguccAGuUGCCGCGCCGcGg -3'
miRNA:   3'- -CGGUucaCCGGUU----------UC-GCGGCGUGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.