miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 5' -57.5 NC_001875.2 + 99373 1.12 0.001235
Target:  5'- cGCCAAGUGGCCAAAGCGCCGCACCGGc -3'
miRNA:   3'- -CGGUUCACCGGUUUCGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 109257 0.83 0.11574
Target:  5'- aGCCGGccGGCCAAcGCGCCGCGcCCGGg -3'
miRNA:   3'- -CGGUUcaCCGGUUuCGCGGCGU-GGCC- -5'
6994 5' -57.5 NC_001875.2 + 37099 0.8 0.178839
Target:  5'- cGCCGcgugGGUGuGCgGGcgcGGCGCCGCGCCGGc -3'
miRNA:   3'- -CGGU----UCAC-CGgUU---UCGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 94247 0.78 0.223422
Target:  5'- cGCCGugcGGccGGCCGcGGCGCuCGCGCCGGc -3'
miRNA:   3'- -CGGU---UCa-CCGGUuUCGCG-GCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 84342 0.78 0.228921
Target:  5'- cGgCGAGUGG-CGGAGCgGCUGCGCCGGu -3'
miRNA:   3'- -CgGUUCACCgGUUUCG-CGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 32786 0.77 0.252068
Target:  5'- cGCgGcGUGGgC-GGGCGCCGCGCCGGc -3'
miRNA:   3'- -CGgUuCACCgGuUUCGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 7141 0.77 0.264348
Target:  5'- uGCCAGGcgcguUGGCCGAAGgGCCaacaucuuuGCGCUGGa -3'
miRNA:   3'- -CGGUUC-----ACCGGUUUCgCGG---------CGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 33465 0.76 0.297163
Target:  5'- gGCC-AGUGGUCGAAaguggcGCGCCGCgcGCUGGg -3'
miRNA:   3'- -CGGuUCACCGGUUU------CGCGGCG--UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 98575 0.76 0.304094
Target:  5'- cGUCAAGggcgacGGCUuuugcaacucGGAGCGCCGCGCCGa -3'
miRNA:   3'- -CGGUUCa-----CCGG----------UUUCGCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 61645 0.76 0.311148
Target:  5'- cGCCcAGUGGUCGccGuCGCCGC-CCGGc -3'
miRNA:   3'- -CGGuUCACCGGUuuC-GCGGCGuGGCC- -5'
6994 5' -57.5 NC_001875.2 + 89294 0.76 0.318326
Target:  5'- gGUguAGUGGCCGcauGGCGCCGcCACCa- -3'
miRNA:   3'- -CGguUCACCGGUu--UCGCGGC-GUGGcc -5'
6994 5' -57.5 NC_001875.2 + 12424 0.75 0.333053
Target:  5'- cGCCAAGcaGGCCGuuGCGUgCGCGCCGcGg -3'
miRNA:   3'- -CGGUUCa-CCGGUuuCGCG-GCGUGGC-C- -5'
6994 5' -57.5 NC_001875.2 + 113675 0.75 0.356069
Target:  5'- cGCCAcAGUGGCgGcgucgcgcGCGCCGCACCa- -3'
miRNA:   3'- -CGGU-UCACCGgUuu------CGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 37573 0.74 0.363985
Target:  5'- aUCGAGUGgaugcGCCGgcgcGAGCGCCGCgGCCGGc -3'
miRNA:   3'- cGGUUCAC-----CGGU----UUCGCGGCG-UGGCC- -5'
6994 5' -57.5 NC_001875.2 + 101159 0.74 0.388456
Target:  5'- aCCAcGUGGCCGugcGCGUgGCGCUGGu -3'
miRNA:   3'- cGGUuCACCGGUuu-CGCGgCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 108887 0.74 0.388456
Target:  5'- gGCgGAGgcGuaCAuGGCGCCGCACCGGu -3'
miRNA:   3'- -CGgUUCa-CcgGUuUCGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 57684 0.74 0.39685
Target:  5'- uCCAAGcUGGCgGcggcGGGCGCCGCGCCc- -3'
miRNA:   3'- cGGUUC-ACCGgU----UUCGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 91747 0.73 0.422718
Target:  5'- cGCCAgccAGUGGCgCGucAGCGCCGCGgCCu- -3'
miRNA:   3'- -CGGU---UCACCG-GUu-UCGCGGCGU-GGcc -5'
6994 5' -57.5 NC_001875.2 + 11192 0.73 0.431564
Target:  5'- cGCCGuuGUGGagcaCGA--CGCCGCGCCGGa -3'
miRNA:   3'- -CGGUu-CACCg---GUUucGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 109870 0.73 0.440516
Target:  5'- uGCCAAGcUGGCgcuGGCGCCGC-CCa- -3'
miRNA:   3'- -CGGUUC-ACCGguuUCGCGGCGuGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.