Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6994 | 5' | -57.5 | NC_001875.2 | + | 18665 | 0.71 | 0.525394 |
Target: 5'- aGCCAacccauGGUuGCCAuaucaaacGGCGCgCGCGCCGGc -3' miRNA: 3'- -CGGU------UCAcCGGUu-------UCGCG-GCGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 33930 | 0.73 | 0.449573 |
Target: 5'- cGUgAGGUGGCCcagcuuGCGCCGCGuuUCGGc -3' miRNA: 3'- -CGgUUCACCGGuuu---CGCGGCGU--GGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 10364 | 0.73 | 0.449573 |
Target: 5'- cGCCGGGcuacggccUGGCCGAAaacuuugaacGcCGCCGCGCCGu -3' miRNA: 3'- -CGGUUC--------ACCGGUUU----------C-GCGGCGUGGCc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 58629 | 0.73 | 0.458732 |
Target: 5'- gGCC-AGU-GCUGAGGCGCUGCACCu- -3' miRNA: 3'- -CGGuUCAcCGGUUUCGCGGCGUGGcc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 42997 | 0.72 | 0.495361 |
Target: 5'- gGCCGuugcgaaGGUGGCCuccauugcGAGUGCCGCGCgccgCGGc -3' miRNA: 3'- -CGGU-------UCACCGGu-------UUCGCGGCGUG----GCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 49562 | 0.72 | 0.495361 |
Target: 5'- cGCCAgaauuguAGUGGCC-AAGCaGCugCGCGCCGa -3' miRNA: 3'- -CGGU-------UCACCGGuUUCG-CG--GCGUGGCc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 12192 | 0.72 | 0.495361 |
Target: 5'- cGCCGAGguuugccUGGCCGuaAAGUGCCGauCGCCGu -3' miRNA: 3'- -CGGUUC-------ACCGGU--UUCGCGGC--GUGGCc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 21324 | 0.72 | 0.496318 |
Target: 5'- cGCCAGGUGGCCc--GCGgC-CACCuGGg -3' miRNA: 3'- -CGGUUCACCGGuuuCGCgGcGUGG-CC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 129530 | 0.72 | 0.500154 |
Target: 5'- gGCCGAGcUGGCCGAgcugcgcgcggccacGGCGCgCGCGCa-- -3' miRNA: 3'- -CGGUUC-ACCGGUU---------------UCGCG-GCGUGgcc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 109870 | 0.73 | 0.440516 |
Target: 5'- uGCCAAGcUGGCgcuGGCGCCGC-CCa- -3' miRNA: 3'- -CGGUUC-ACCGguuUCGCGGCGuGGcc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 11192 | 0.73 | 0.431564 |
Target: 5'- cGCCGuuGUGGagcaCGA--CGCCGCGCCGGa -3' miRNA: 3'- -CGGUu-CACCg---GUUucGCGGCGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 37573 | 0.74 | 0.363985 |
Target: 5'- aUCGAGUGgaugcGCCGgcgcGAGCGCCGCgGCCGGc -3' miRNA: 3'- cGGUUCAC-----CGGU----UUCGCGGCG-UGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 109257 | 0.83 | 0.11574 |
Target: 5'- aGCCGGccGGCCAAcGCGCCGCGcCCGGg -3' miRNA: 3'- -CGGUUcaCCGGUUuCGCGGCGU-GGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 37099 | 0.8 | 0.178839 |
Target: 5'- cGCCGcgugGGUGuGCgGGcgcGGCGCCGCGCCGGc -3' miRNA: 3'- -CGGU----UCAC-CGgUU---UCGCGGCGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 84342 | 0.78 | 0.228921 |
Target: 5'- cGgCGAGUGG-CGGAGCgGCUGCGCCGGu -3' miRNA: 3'- -CgGUUCACCgGUUUCG-CGGCGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 32786 | 0.77 | 0.252068 |
Target: 5'- cGCgGcGUGGgC-GGGCGCCGCGCCGGc -3' miRNA: 3'- -CGgUuCACCgGuUUCGCGGCGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 7141 | 0.77 | 0.264348 |
Target: 5'- uGCCAGGcgcguUGGCCGAAGgGCCaacaucuuuGCGCUGGa -3' miRNA: 3'- -CGGUUC-----ACCGGUUUCgCGG---------CGUGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 33465 | 0.76 | 0.297163 |
Target: 5'- gGCC-AGUGGUCGAAaguggcGCGCCGCgcGCUGGg -3' miRNA: 3'- -CGGuUCACCGGUUU------CGCGGCG--UGGCC- -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 89294 | 0.76 | 0.318326 |
Target: 5'- gGUguAGUGGCCGcauGGCGCCGcCACCa- -3' miRNA: 3'- -CGguUCACCGGUu--UCGCGGC-GUGGcc -5' |
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6994 | 5' | -57.5 | NC_001875.2 | + | 12424 | 0.75 | 0.333053 |
Target: 5'- cGCCAAGcaGGCCGuuGCGUgCGCGCCGcGg -3' miRNA: 3'- -CGGUUCa-CCGGUuuCGCG-GCGUGGC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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