miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6994 5' -57.5 NC_001875.2 + 1029 0.66 0.810786
Target:  5'- cGCguGGcggGGcCCGAGGCGCacaGCGuuGGg -3'
miRNA:   3'- -CGguUCa--CC-GGUUUCGCGg--CGUggCC- -5'
6994 5' -57.5 NC_001875.2 + 1696 0.67 0.765297
Target:  5'- gGCCcucuucuGUGGCCAcaaaugcugcGGGCGC-GaCACCGGu -3'
miRNA:   3'- -CGGuu-----CACCGGU----------UUCGCGgC-GUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 1846 0.66 0.836219
Target:  5'- cGCCAauGGUagauuuGGCCAcGAGCauGCCGcCGCCGc -3'
miRNA:   3'- -CGGU--UCA------CCGGU-UUCG--CGGC-GUGGCc -5'
6994 5' -57.5 NC_001875.2 + 3077 0.71 0.545132
Target:  5'- cGCCGGGgucGCCcacGGCGUgcaCGCGCCGGg -3'
miRNA:   3'- -CGGUUCac-CGGuu-UCGCG---GCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 4448 0.69 0.676789
Target:  5'- cGCCAGcacuuUGGCCAggcucuGAGCGCCGU-CCGc -3'
miRNA:   3'- -CGGUUc----ACCGGU------UUCGCGGCGuGGCc -5'
6994 5' -57.5 NC_001875.2 + 5279 0.68 0.746217
Target:  5'- uGCCAcGcgaUGGCCGAcGUGcCCGCGCCc- -3'
miRNA:   3'- -CGGUuC---ACCGGUUuCGC-GGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 5916 0.66 0.836219
Target:  5'- cGCCGGcaUGGCguuggguAGCGCCGCGCaGGu -3'
miRNA:   3'- -CGGUUc-ACCGguu----UCGCGGCGUGgCC- -5'
6994 5' -57.5 NC_001875.2 + 6471 0.68 0.695937
Target:  5'- cGUCAGGUcgauuacGGCgcccaacgCGGAGUGCCGCGCCa- -3'
miRNA:   3'- -CGGUUCA-------CCG--------GUUUCGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 7034 0.69 0.66056
Target:  5'- aGCgAGGUGGCCGc-GCGCuugucggccugguucCGCugCGGc -3'
miRNA:   3'- -CGgUUCACCGGUuuCGCG---------------GCGugGCC- -5'
6994 5' -57.5 NC_001875.2 + 7141 0.77 0.264348
Target:  5'- uGCCAGGcgcguUGGCCGAAGgGCCaacaucuuuGCGCUGGa -3'
miRNA:   3'- -CGGUUC-----ACCGGUUUCgCGG---------CGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 7493 0.67 0.765297
Target:  5'- cGCuCAuuUGGCUGAucGGCGCCGUGCUGu -3'
miRNA:   3'- -CG-GUucACCGGUU--UCGCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 8495 0.67 0.773734
Target:  5'- cGCCGGGc-GCCGuccguguGGGCGCCGCGCa-- -3'
miRNA:   3'- -CGGUUCacCGGU-------UUCGCGGCGUGgcc -5'
6994 5' -57.5 NC_001875.2 + 9703 0.68 0.69694
Target:  5'- cGCCGucGUGcgcGCCGGccGCGCCGCGCCc- -3'
miRNA:   3'- -CGGUu-CAC---CGGUUu-CGCGGCGUGGcc -5'
6994 5' -57.5 NC_001875.2 + 9761 0.66 0.827916
Target:  5'- cGCCGuuccgaGGCC-AAGCGCaCGCGgcacauCCGGg -3'
miRNA:   3'- -CGGUuca---CCGGuUUCGCG-GCGU------GGCC- -5'
6994 5' -57.5 NC_001875.2 + 10284 0.71 0.555092
Target:  5'- cGCCGuGGUGGUCGAGGCcuuuGCCgacuacGCGCUGGu -3'
miRNA:   3'- -CGGU-UCACCGGUUUCG----CGG------CGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 10364 0.73 0.449573
Target:  5'- cGCCGGGcuacggccUGGCCGAAaacuuugaacGcCGCCGCGCCGu -3'
miRNA:   3'- -CGGUUC--------ACCGGUUU----------C-GCGGCGUGGCc -5'
6994 5' -57.5 NC_001875.2 + 11192 0.73 0.431564
Target:  5'- cGCCGuuGUGGagcaCGA--CGCCGCGCCGGa -3'
miRNA:   3'- -CGGUu-CACCg---GUUucGCGGCGUGGCC- -5'
6994 5' -57.5 NC_001875.2 + 12192 0.72 0.495361
Target:  5'- cGCCGAGguuugccUGGCCGuaAAGUGCCGauCGCCGu -3'
miRNA:   3'- -CGGUUC-------ACCGGU--UUCGCGGC--GUGGCc -5'
6994 5' -57.5 NC_001875.2 + 12424 0.75 0.333053
Target:  5'- cGCCAAGcaGGCCGuuGCGUgCGCGCCGcGg -3'
miRNA:   3'- -CGGUUCa-CCGGUuuCGCG-GCGUGGC-C- -5'
6994 5' -57.5 NC_001875.2 + 12760 0.69 0.683862
Target:  5'- -aUggGUGGCgguuguuguccagcCGGGGCGCCGCgcacaugcgcacGCCGGa -3'
miRNA:   3'- cgGuuCACCG--------------GUUUCGCGGCG------------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.