miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6996 5' -48.2 NC_001875.2 + 26537 0.66 0.998544
Target:  5'- ----gAGCugGCGCUUgagUCGGcGuGCu -3'
miRNA:   3'- uuuuaUCGugCGCGAAa--AGCU-CuCGc -5'
6996 5' -48.2 NC_001875.2 + 100848 0.66 0.998544
Target:  5'- -----cGCGCGCGCguaaucuugcUUUUUGAGcGCGa -3'
miRNA:   3'- uuuuauCGUGCGCG----------AAAAGCUCuCGC- -5'
6996 5' -48.2 NC_001875.2 + 126673 0.66 0.998544
Target:  5'- -----uGCACGCGCUga-CGAGcacguuGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGAaaaGCUCu-----CGC- -5'
6996 5' -48.2 NC_001875.2 + 84417 0.66 0.998515
Target:  5'- ----cGGCGCGUauaggugccaucgGCggaUCGGGAGCGg -3'
miRNA:   3'- uuuuaUCGUGCG-------------CGaaaAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 110160 0.66 0.998233
Target:  5'- -----cGCGuCGCGCUcgUCGGGcGGCGu -3'
miRNA:   3'- uuuuauCGU-GCGCGAaaAGCUC-UCGC- -5'
6996 5' -48.2 NC_001875.2 + 46332 0.66 0.998233
Target:  5'- --cGUGGC-CGcCGCUUUUgGAGgAGCa -3'
miRNA:   3'- uuuUAUCGuGC-GCGAAAAgCUC-UCGc -5'
6996 5' -48.2 NC_001875.2 + 72572 0.66 0.997868
Target:  5'- ----gGGCGCGgGCgcugCGGGuGCGg -3'
miRNA:   3'- uuuuaUCGUGCgCGaaaaGCUCuCGC- -5'
6996 5' -48.2 NC_001875.2 + 77415 0.67 0.996374
Target:  5'- -----cGcCACGCGCUgUUCGgcgacaAGAGCGg -3'
miRNA:   3'- uuuuauC-GUGCGCGAaAAGC------UCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 47323 0.67 0.995716
Target:  5'- aAAGAUGacGCACGUGCUg-UCGGcGGCGg -3'
miRNA:   3'- -UUUUAU--CGUGCGCGAaaAGCUcUCGC- -5'
6996 5' -48.2 NC_001875.2 + 27195 0.67 0.995716
Target:  5'- cAGGUGGCACGCGCUaggaUCGGccuugucGGCGc -3'
miRNA:   3'- uUUUAUCGUGCGCGAaa--AGCUc------UCGC- -5'
6996 5' -48.2 NC_001875.2 + 90438 0.67 0.995716
Target:  5'- --uGUAGaCGCGCGCgcagaggcgUCGGuGGGCGg -3'
miRNA:   3'- uuuUAUC-GUGCGCGaaa------AGCU-CUCGC- -5'
6996 5' -48.2 NC_001875.2 + 123505 0.67 0.995716
Target:  5'- gAGGAaGGCAUGgaCGUUgaugUUCGAGGGCGu -3'
miRNA:   3'- -UUUUaUCGUGC--GCGAa---AAGCUCUCGC- -5'
6996 5' -48.2 NC_001875.2 + 65778 0.67 0.995716
Target:  5'- uGGGcgAGCACGCGCgcggCGucGGCGc -3'
miRNA:   3'- -UUUuaUCGUGCGCGaaaaGCucUCGC- -5'
6996 5' -48.2 NC_001875.2 + 31553 0.67 0.994965
Target:  5'- -----uGCACGCGCUgcaggUUGGGcccGGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGAaa---AGCUC---UCGC- -5'
6996 5' -48.2 NC_001875.2 + 122155 0.67 0.994965
Target:  5'- -----uGCACGCGCacaauuUUUUCGAcAGCGc -3'
miRNA:   3'- uuuuauCGUGCGCG------AAAAGCUcUCGC- -5'
6996 5' -48.2 NC_001875.2 + 66474 0.67 0.994965
Target:  5'- -----cGCGCGCGCgguuuUUUUCGuuGAGCa -3'
miRNA:   3'- uuuuauCGUGCGCG-----AAAAGCu-CUCGc -5'
6996 5' -48.2 NC_001875.2 + 33298 0.67 0.994109
Target:  5'- cAAAGUAGCACuGCGggUUggCGAGcGCGu -3'
miRNA:   3'- -UUUUAUCGUG-CGCgaAAa-GCUCuCGC- -5'
6996 5' -48.2 NC_001875.2 + 86147 0.68 0.993037
Target:  5'- ----cGGCGCGCGCgg--CGAGAugacggacgugguGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGaaaaGCUCU-------------CGC- -5'
6996 5' -48.2 NC_001875.2 + 85226 0.68 0.992049
Target:  5'- -cGGUAGCGC-CGCaugUCGAcGAGCGc -3'
miRNA:   3'- uuUUAUCGUGcGCGaaaAGCU-CUCGC- -5'
6996 5' -48.2 NC_001875.2 + 110951 0.68 0.992049
Target:  5'- cGAcgGGCugGCGCUg--CaGGAGCa -3'
miRNA:   3'- uUUuaUCGugCGCGAaaaGcUCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.