miRNA display CGI


Results 1 - 20 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 92190 0.66 0.394685
Target:  5'- aGCCacgGGCCAuuGCGCaaacGCCGCcaccgucgacuGCCgGGGCc -3'
miRNA:   3'- -CGG---CCGGU--UGCG----CGGCG-----------CGGgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 42881 0.66 0.413903
Target:  5'- cGCCaGCgCAACGCGUucaacgucgaggcugUGCGCCgcaugccgUGGGCGu -3'
miRNA:   3'- -CGGcCG-GUUGCGCG---------------GCGCGG--------GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 37112 0.66 0.418797
Target:  5'- uGCgGGC--GCgGCGCCGCGCC--GGCGu -3'
miRNA:   3'- -CGgCCGguUG-CGCGGCGCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 54576 0.66 0.41066
Target:  5'- cGgCGGCCGcuucGCccgGCGgCGCGCCCacGGCGc -3'
miRNA:   3'- -CgGCCGGU----UG---CGCgGCGCGGGc-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 71176 0.66 0.41066
Target:  5'- uGCC-GCCAGCGCGCacuuugguacgCGCauugGCUgGGGCa -3'
miRNA:   3'- -CGGcCGGUUGCGCG-----------GCG----CGGgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 67599 0.66 0.416346
Target:  5'- cGUCGGUguGCaccguuuggaacguGCGCgGCugacuGCCCGGGUGg -3'
miRNA:   3'- -CGGCCGguUG--------------CGCGgCG-----CGGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 41920 0.66 0.41066
Target:  5'- gGCCcGCgGACGCGCCGCccuuuauauGCgCGGcGCc -3'
miRNA:   3'- -CGGcCGgUUGCGCGGCG---------CGgGCC-CGc -5'
7005 3' -66.9 NC_001875.2 + 124400 0.66 0.43536
Target:  5'- cGCCGcaaucGCCGGCGCGCaguUGCCCucgucguuGGGCc -3'
miRNA:   3'- -CGGC-----CGGUUGCGCGgc-GCGGG--------CCCGc -5'
7005 3' -66.9 NC_001875.2 + 40610 0.66 0.386849
Target:  5'- cGCCGuggugggcGCCAccACGCGCCuCGCCuacuaCGaGGCGg -3'
miRNA:   3'- -CGGC--------CGGU--UGCGCGGcGCGG-----GC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 53198 0.66 0.386849
Target:  5'- uGCaCGGCCucGACGaGCUGUuCCCGGGUc -3'
miRNA:   3'- -CG-GCCGG--UUGCgCGGCGcGGGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 74100 0.66 0.386849
Target:  5'- aGuuGGgCAGCGaCGCCGUGCUgGcGCGu -3'
miRNA:   3'- -CggCCgGUUGC-GCGGCGCGGgCcCGC- -5'
7005 3' -66.9 NC_001875.2 + 10299 0.66 0.394685
Target:  5'- gGCCuuuGCCGacuACGCGCUgGUGUuuGGGCa -3'
miRNA:   3'- -CGGc--CGGU---UGCGCGG-CGCGggCCCGc -5'
7005 3' -66.9 NC_001875.2 + 42156 0.66 0.387628
Target:  5'- cGUCGGCCGucGCGCGgucaaacguaaacgaCGCGCggUUGGGCGu -3'
miRNA:   3'- -CGGCCGGU--UGCGCg--------------GCGCG--GGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 118322 0.66 0.41066
Target:  5'- gGCCGGCC-GCGCGCUGCaggugaugaaCCUGuuuuugaacagcGGCGg -3'
miRNA:   3'- -CGGCCGGuUGCGCGGCGc---------GGGC------------CCGC- -5'
7005 3' -66.9 NC_001875.2 + 98803 0.66 0.386849
Target:  5'- cGCgCGGCgCGGCGCccGCCGCGCUgcgcuuaaGGGgGu -3'
miRNA:   3'- -CG-GCCG-GUUGCG--CGGCGCGGg-------CCCgC- -5'
7005 3' -66.9 NC_001875.2 + 66305 0.66 0.41066
Target:  5'- uGCgCGGCCGGCGaGuuGaugGCgUGGGCGg -3'
miRNA:   3'- -CG-GCCGGUUGCgCggCg--CGgGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 7235 0.66 0.386849
Target:  5'- gGCCGGuUCAugcacuuucCGCGCUGCagcgGCCUGGcGCGg -3'
miRNA:   3'- -CGGCC-GGUu--------GCGCGGCG----CGGGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 96318 0.66 0.402622
Target:  5'- aGCCGcGUauaUAACGCGCgGcCGCCCGuugccGGCa -3'
miRNA:   3'- -CGGC-CG---GUUGCGCGgC-GCGGGC-----CCGc -5'
7005 3' -66.9 NC_001875.2 + 97963 0.66 0.418797
Target:  5'- -gCGGCCAccgaaACGCcguucugccgGCCGCGCaCGGuGCGc -3'
miRNA:   3'- cgGCCGGU-----UGCG----------CGGCGCGgGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 17083 0.66 0.41066
Target:  5'- aGCUGGUCAggccggGCaaGCCGCGCgCCacuGGCGg -3'
miRNA:   3'- -CGGCCGGU------UGcgCGGCGCG-GGc--CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.