miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 109261 1.08 0.000341
Target:  5'- gGCCGGCCAACGCGCCGCGCCCGGGCGu -3'
miRNA:   3'- -CGGCCGGUUGCGCGGCGCGGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 33461 0.83 0.025644
Target:  5'- gGCCGGCCAguggucgaaagugGCGCGCCGCGCgCUGGGg- -3'
miRNA:   3'- -CGGCCGGU-------------UGCGCGGCGCG-GGCCCgc -5'
7005 3' -66.9 NC_001875.2 + 9715 0.8 0.048613
Target:  5'- cGCCGGCC---GCGCCGCGCCCGaagcguGGCa -3'
miRNA:   3'- -CGGCCGGuugCGCGGCGCGGGC------CCGc -5'
7005 3' -66.9 NC_001875.2 + 94730 0.79 0.058012
Target:  5'- cGCCGGC--GCgGCGCCGCGCCCGcacacccacgcGGCGg -3'
miRNA:   3'- -CGGCCGguUG-CGCGGCGCGGGC-----------CCGC- -5'
7005 3' -66.9 NC_001875.2 + 49858 0.78 0.062559
Target:  5'- cGCCGGCCGGCGCGCCuuGCC--GGCGc -3'
miRNA:   3'- -CGGCCGGUUGCGCGGcgCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 36712 0.77 0.072527
Target:  5'- cGCCGGCCGugGCGCGCUccacaacgguuagGCGCUCGaGGUGa -3'
miRNA:   3'- -CGGCCGGU--UGCGCGG-------------CGCGGGC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 3077 0.77 0.072709
Target:  5'- cGCCGGggucgcCCAcgGCGUGCaCGCGCCgGGGCGc -3'
miRNA:   3'- -CGGCC------GGU--UGCGCG-GCGCGGgCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 32428 0.76 0.085272
Target:  5'- cGCUGGCCAACaauGCGCUGCGCgacccgcuggcgccgCCGGuGCGg -3'
miRNA:   3'- -CGGCCGGUUG---CGCGGCGCG---------------GGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 59119 0.76 0.090945
Target:  5'- cGCUGGCCGACGCGCaaGCGCaauuaaCGGcGCGc -3'
miRNA:   3'- -CGGCCGGUUGCGCGg-CGCGg-----GCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 111889 0.76 0.093222
Target:  5'- cGCCGGCCGgaccguGCGCGCCG-GCCgcuccguguaCGGGCc -3'
miRNA:   3'- -CGGCCGGU------UGCGCGGCgCGG----------GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 97871 0.76 0.093222
Target:  5'- uGCCGGUCGgcuGCGCGCCGCa--CGGGCa -3'
miRNA:   3'- -CGGCCGGU---UGCGCGGCGcggGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 37585 0.75 0.102877
Target:  5'- cGCCGGCgCGA-GCGCCGCGgCCGGccGCa -3'
miRNA:   3'- -CGGCCG-GUUgCGCGGCGCgGGCC--CGc -5'
7005 3' -66.9 NC_001875.2 + 110269 0.75 0.108051
Target:  5'- gGCCGGCUGGcCGCGgaGCGCgCGGGCu -3'
miRNA:   3'- -CGGCCGGUU-GCGCggCGCGgGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 59928 0.75 0.113469
Target:  5'- cGCUcGCCGACGCGCa-CGCCCaguGGGCGg -3'
miRNA:   3'- -CGGcCGGUUGCGCGgcGCGGG---CCCGC- -5'
7005 3' -66.9 NC_001875.2 + 47676 0.75 0.113469
Target:  5'- -gCGGCCGcgGCGCGCCGCGCguuucucaacgCgGGGCa -3'
miRNA:   3'- cgGCCGGU--UGCGCGGCGCG-----------GgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 9047 0.74 0.115424
Target:  5'- cGCCGGCCGcgccgguuucCGCGCCgguuuccgccaacuGCGCCUGuGGCGa -3'
miRNA:   3'- -CGGCCGGUu---------GCGCGG--------------CGCGGGC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 51322 0.74 0.116272
Target:  5'- cGUCGGCCAGCuCGCaCGCGCCauGGUGu -3'
miRNA:   3'- -CGGCCGGUUGcGCG-GCGCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 72735 0.74 0.119139
Target:  5'- cGUCGGCCAGCGaCGCCGUcaGCCUGGa-- -3'
miRNA:   3'- -CGGCCGGUUGC-GCGGCG--CGGGCCcgc -5'
7005 3' -66.9 NC_001875.2 + 66151 0.74 0.125072
Target:  5'- gGUCGGCCGGCGUGaUCGUGCUgauCGGGCu -3'
miRNA:   3'- -CGGCCGGUUGCGC-GGCGCGG---GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 20793 0.74 0.128141
Target:  5'- aGCC-GUCGACGCGCaGUGCgCGGGCGu -3'
miRNA:   3'- -CGGcCGGUUGCGCGgCGCGgGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.