miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 1010 0.69 0.258238
Target:  5'- uGCgGGCCcguucuugcAGCGCGUgGCgggGCCCGaGGCGc -3'
miRNA:   3'- -CGgCCGG---------UUGCGCGgCG---CGGGC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 1620 0.73 0.134488
Target:  5'- cCCGGCaaagAACGCGCUGUGCCCGacacGCGa -3'
miRNA:   3'- cGGCCGg---UUGCGCGGCGCGGGCc---CGC- -5'
7005 3' -66.9 NC_001875.2 + 2271 0.66 0.386071
Target:  5'- uGCgGGCCAuguugacgucgugAUGCGCgCGCGCCgUGGccGCGc -3'
miRNA:   3'- -CGgCCGGU-------------UGCGCG-GCGCGG-GCC--CGC- -5'
7005 3' -66.9 NC_001875.2 + 2668 0.66 0.386849
Target:  5'- cGCCGG-CGGCGCcuggggcaacuGCgGCGCCUcGGCa -3'
miRNA:   3'- -CGGCCgGUUGCG-----------CGgCGCGGGcCCGc -5'
7005 3' -66.9 NC_001875.2 + 2745 0.69 0.25254
Target:  5'- cGCUGucauugaaaggcGCCAGCG-GCUGCuCCCGGGCa -3'
miRNA:   3'- -CGGC------------CGGUUGCgCGGCGcGGGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 3077 0.77 0.072709
Target:  5'- cGCCGGggucgcCCAcgGCGUGCaCGCGCCgGGGCGc -3'
miRNA:   3'- -CGGCC------GGU--UGCGCG-GCGCGGgCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 3112 0.66 0.427031
Target:  5'- -gCGGCU--CGCGgCGCaGaCCUGGGCGg -3'
miRNA:   3'- cgGCCGGuuGCGCgGCG-C-GGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 5288 0.73 0.151637
Target:  5'- -aUGGCCGACGUGcCCGCGCCCGa-CGa -3'
miRNA:   3'- cgGCCGGUUGCGC-GGCGCGGGCccGC- -5'
7005 3' -66.9 NC_001875.2 + 5532 0.67 0.379117
Target:  5'- cGCCGGCCGccguugagGCGCGCguuaagGUGCCagucacGGCGa -3'
miRNA:   3'- -CGGCCGGU--------UGCGCGg-----CGCGGgc----CCGC- -5'
7005 3' -66.9 NC_001875.2 + 5916 0.73 0.154191
Target:  5'- cGCCGGCauggcguuggguaGCGCCGCGCaggUGGGCGc -3'
miRNA:   3'- -CGGCCGguug---------CGCGGCGCGg--GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 6920 0.67 0.344906
Target:  5'- cGCuCGGCCGagggcguggaccGCGCGCuacaacaaaaccCGCGCCUcaacacguacuugcaGGGCGc -3'
miRNA:   3'- -CG-GCCGGU------------UGCGCG------------GCGCGGG---------------CCCGC- -5'
7005 3' -66.9 NC_001875.2 + 7110 0.73 0.144551
Target:  5'- cGCUGGCCGacauugaccgccACGCGCCGCuuGCCa-GGCGc -3'
miRNA:   3'- -CGGCCGGU------------UGCGCGGCG--CGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 7235 0.66 0.386849
Target:  5'- gGCCGGuUCAugcacuuucCGCGCUGCagcgGCCUGGcGCGg -3'
miRNA:   3'- -CGGCC-GGUu--------GCGCGGCG----CGGGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 7351 0.72 0.181945
Target:  5'- cCCGGCCAAaccaucauguguauCGaGCCGUacaGCCUGGGCGa -3'
miRNA:   3'- cGGCCGGUU--------------GCgCGGCG---CGGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 8452 0.66 0.427031
Target:  5'- -aCGGCCAaauGCGggugcuuggucaCGUCGCGCggaaacaccacgCCGGGCGc -3'
miRNA:   3'- cgGCCGGU---UGC------------GCGGCGCG------------GGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 9047 0.74 0.115424
Target:  5'- cGCCGGCCGcgccgguuucCGCGCCgguuuccgccaacuGCGCCUGuGGCGa -3'
miRNA:   3'- -CGGCCGGUu---------GCGCGG--------------CGCGGGC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 9715 0.8 0.048613
Target:  5'- cGCCGGCC---GCGCCGCGCCCGaagcguGGCa -3'
miRNA:   3'- -CGGCCGGuugCGCGGCGCGGGC------CCGc -5'
7005 3' -66.9 NC_001875.2 + 9761 0.68 0.313639
Target:  5'- cGCCguuccgaGGCCAA-GCGCaCGCGgcacaUCCGGGCa -3'
miRNA:   3'- -CGG-------CCGGUUgCGCG-GCGC-----GGGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 10299 0.66 0.394685
Target:  5'- gGCCuuuGCCGacuACGCGCUgGUGUuuGGGCa -3'
miRNA:   3'- -CGGc--CGGU---UGCGCGG-CGCGggCCCGc -5'
7005 3' -66.9 NC_001875.2 + 10375 0.74 0.131279
Target:  5'- gGCCuGGCCGaaaacuuugaACGcCGCCGCGCCgUGGcGCGg -3'
miRNA:   3'- -CGG-CCGGU----------UGC-GCGGCGCGG-GCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.