miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 5916 0.73 0.154191
Target:  5'- cGCCGGCauggcguuggguaGCGCCGCGCaggUGGGCGc -3'
miRNA:   3'- -CGGCCGguug---------CGCGGCGCGg--GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 41806 0.74 0.131279
Target:  5'- cGCCGGCacGCGCGCCgGCGCCgCGGccaguuGCGc -3'
miRNA:   3'- -CGGCCGguUGCGCGG-CGCGG-GCC------CGC- -5'
7005 3' -66.9 NC_001875.2 + 1620 0.73 0.134488
Target:  5'- cCCGGCaaagAACGCGCUGUGCCCGacacGCGa -3'
miRNA:   3'- cGGCCGg---UUGCGCGGCGCGGGCc---CGC- -5'
7005 3' -66.9 NC_001875.2 + 82163 0.73 0.137768
Target:  5'- uGCUGGCCGACGgGCgGUacgugcgcaaccGCCgCGGGCa -3'
miRNA:   3'- -CGGCCGGUUGCgCGgCG------------CGG-GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 7110 0.73 0.144551
Target:  5'- cGCUGGCCGacauugaccgccACGCGCCGCuuGCCa-GGCGc -3'
miRNA:   3'- -CGGCCGGU------------UGCGCGGCG--CGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 128726 0.73 0.147702
Target:  5'- cGCCGcCCAggucugcGCGCgaGCCGCGCCCcGGCGc -3'
miRNA:   3'- -CGGCcGGU-------UGCG--CGGCGCGGGcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 40163 0.73 0.148056
Target:  5'- gGCCGG-CAACGCGauGCGCauGGGCGu -3'
miRNA:   3'- -CGGCCgGUUGCGCggCGCGggCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 36418 0.73 0.148056
Target:  5'- cGCUGGCCGGCGcCGCgGUGU-CGGGCu -3'
miRNA:   3'- -CGGCCGGUUGC-GCGgCGCGgGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 5288 0.73 0.151637
Target:  5'- -aUGGCCGACGUGcCCGCGCCCGa-CGa -3'
miRNA:   3'- cgGCCGGUUGCGC-GGCGCGGGCccGC- -5'
7005 3' -66.9 NC_001875.2 + 10375 0.74 0.131279
Target:  5'- gGCCuGGCCGaaaacuuugaACGcCGCCGCGCCgUGGcGCGg -3'
miRNA:   3'- -CGG-CCGGU----------UGC-GCGGCGCGG-GCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 51322 0.74 0.116272
Target:  5'- cGUCGGCCAGCuCGCaCGCGCCauGGUGu -3'
miRNA:   3'- -CGGCCGGUUGcGCG-GCGCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 47676 0.75 0.113469
Target:  5'- -gCGGCCGcgGCGCGCCGCGCguuucucaacgCgGGGCa -3'
miRNA:   3'- cgGCCGGU--UGCGCGGCGCG-----------GgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 33461 0.83 0.025644
Target:  5'- gGCCGGCCAguggucgaaagugGCGCGCCGCGCgCUGGGg- -3'
miRNA:   3'- -CGGCCGGU-------------UGCGCGGCGCG-GGCCCgc -5'
7005 3' -66.9 NC_001875.2 + 49858 0.78 0.062559
Target:  5'- cGCCGGCCGGCGCGCCuuGCC--GGCGc -3'
miRNA:   3'- -CGGCCGGUUGCGCGGcgCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 36712 0.77 0.072527
Target:  5'- cGCCGGCCGugGCGCGCUccacaacgguuagGCGCUCGaGGUGa -3'
miRNA:   3'- -CGGCCGGU--UGCGCGG-------------CGCGGGC-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 59119 0.76 0.090945
Target:  5'- cGCUGGCCGACGCGCaaGCGCaauuaaCGGcGCGc -3'
miRNA:   3'- -CGGCCGGUUGCGCGg-CGCGg-----GCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 97871 0.76 0.093222
Target:  5'- uGCCGGUCGgcuGCGCGCCGCa--CGGGCa -3'
miRNA:   3'- -CGGCCGGU---UGCGCGGCGcggGCCCGc -5'
7005 3' -66.9 NC_001875.2 + 111889 0.76 0.093222
Target:  5'- cGCCGGCCGgaccguGCGCGCCG-GCCgcuccguguaCGGGCc -3'
miRNA:   3'- -CGGCCGGU------UGCGCGGCgCGG----------GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 37585 0.75 0.102877
Target:  5'- cGCCGGCgCGA-GCGCCGCGgCCGGccGCa -3'
miRNA:   3'- -CGGCCG-GUUgCGCGGCGCgGGCC--CGc -5'
7005 3' -66.9 NC_001875.2 + 110269 0.75 0.108051
Target:  5'- gGCCGGCUGGcCGCGgaGCGCgCGGGCu -3'
miRNA:   3'- -CGGCCGGUU-GCGCggCGCGgGCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.