miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 5' -49.5 NC_001875.2 + 84427 0.66 0.996283
Target:  5'- aGGUGCcaucggCGGAUCGGgagc-GGCGGCGg -3'
miRNA:   3'- -UCGCGa-----GUUUGGUCaaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 131743 0.66 0.996283
Target:  5'- uGGUGCaUUggGCCGGcggcgGAucgGGCGGCGc -3'
miRNA:   3'- -UCGCG-AGuuUGGUCaaa--UU---UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 39105 0.66 0.996283
Target:  5'- cGCGCUgCugcACCGGUU---AGCuGGCGg -3'
miRNA:   3'- uCGCGA-Guu-UGGUCAAauuUCG-CCGC- -5'
7005 5' -49.5 NC_001875.2 + 69717 0.66 0.996283
Target:  5'- cGCGCgUCGcGCUAacGUUUGcacggaaucGGGCGGCGa -3'
miRNA:   3'- uCGCG-AGUuUGGU--CAAAU---------UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 44906 0.66 0.995693
Target:  5'- uGGCGCUC--GCCcucgcacucuAGGCGGCGc -3'
miRNA:   3'- -UCGCGAGuuUGGucaaau----UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 129593 0.66 0.995623
Target:  5'- cAGCGac--AGCCAGUUgcu-GCGGCa -3'
miRNA:   3'- -UCGCgaguUUGGUCAAauuuCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 124349 0.66 0.995623
Target:  5'- cGGCGC-CGAucaGCCAaau--GAGCGGCa -3'
miRNA:   3'- -UCGCGaGUU---UGGUcaaauUUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 33064 0.66 0.995623
Target:  5'- uAGCGUUCcgcgcggcuCCAGacUUUGAuGGCGGCGc -3'
miRNA:   3'- -UCGCGAGuuu------GGUC--AAAUU-UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 40335 0.66 0.995623
Target:  5'- cGGgGCUCGAaaugcaGCCGGUUUGcAAGUugcucuccGGCGc -3'
miRNA:   3'- -UCgCGAGUU------UGGUCAAAU-UUCG--------CCGC- -5'
7005 5' -49.5 NC_001875.2 + 48003 0.66 0.995623
Target:  5'- cGCcCUgGAACCAGaucguGGUGGCGg -3'
miRNA:   3'- uCGcGAgUUUGGUCaaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 119532 0.66 0.99548
Target:  5'- gGGCGCguuGACCAcgcacacGGCGGCGu -3'
miRNA:   3'- -UCGCGaguUUGGUcaaauu-UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 42967 0.66 0.99487
Target:  5'- cAGCGCgccaaCAAugCuuugaAAGGCGGCGg -3'
miRNA:   3'- -UCGCGa----GUUugGucaaaUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 121465 0.66 0.99487
Target:  5'- cGGCGUUCAAaguuuucgGCCAGgccgUAGccCGGCGc -3'
miRNA:   3'- -UCGCGAGUU--------UGGUCaa--AUUucGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 29198 0.66 0.99487
Target:  5'- aGGCaaCUUuGGCCAGUUgauGGCGGCc -3'
miRNA:   3'- -UCGc-GAGuUUGGUCAAauuUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 22562 0.66 0.99487
Target:  5'- gAGCGCUCGGuuuuaacgcCCGGgc----GCGGCGc -3'
miRNA:   3'- -UCGCGAGUUu--------GGUCaaauuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 39307 0.66 0.99487
Target:  5'- cGCGCUgCAcACC-GUgcc-GGCGGCGu -3'
miRNA:   3'- uCGCGA-GUuUGGuCAaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 90444 0.66 0.99487
Target:  5'- cGCGCgcgCAGAggcgUCGGU---GGGCGGCGc -3'
miRNA:   3'- uCGCGa--GUUU----GGUCAaauUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 98658 0.66 0.99487
Target:  5'- aGGCGCUgGAAUguaaGGUgugccucGAGCGGCa -3'
miRNA:   3'- -UCGCGAgUUUGg---UCAaau----UUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 34129 0.66 0.99487
Target:  5'- uGCGCguagUGGugCAGUUUGAAGgGGg- -3'
miRNA:   3'- uCGCGa---GUUugGUCAAAUUUCgCCgc -5'
7005 5' -49.5 NC_001875.2 + 98378 0.66 0.99487
Target:  5'- gGGCGCgccCcGACCAcgacGAGGUGGCGg -3'
miRNA:   3'- -UCGCGa--GuUUGGUcaaaUUUCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.