Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7006 | 3' | -53.5 | NC_001875.2 | + | 98942 | 0.66 | 0.955358 |
Target: 5'- gCGCGACGCgCGCGuGUucaGCCGuuUGCa -3' miRNA: 3'- gGCGCUGUG-GUGC-CAcc-UGGUuuACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 1181 | 0.66 | 0.955358 |
Target: 5'- gUCGCGGCacuuuGCCACGcUGaACCGcAUGCg -3' miRNA: 3'- -GGCGCUG-----UGGUGCcACcUGGUuUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 46986 | 0.66 | 0.965405 |
Target: 5'- gCCGCGaugagcGCACCACguuggaggagcugcuGGUGGAgcgcggcgacaacauCCAAAaguUGCa -3' miRNA: 3'- -GGCGC------UGUGGUG---------------CCACCU---------------GGUUU---ACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 12370 | 0.66 | 0.965732 |
Target: 5'- cCCGaCGACgaggguGCCACGGUgccgcucgucgucGGGCCGcuguuUGCc -3' miRNA: 3'- -GGC-GCUG------UGGUGCCA-------------CCUGGUuu---ACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 49449 | 0.66 | 0.966056 |
Target: 5'- gCGCGGC-UgACGGUGGACg----GCg -3' miRNA: 3'- gGCGCUGuGgUGCCACCUGguuuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 47243 | 0.66 | 0.965732 |
Target: 5'- aCCGCGuguacagccucguGCACCAgCGGgucacGACCGAGgacGCg -3' miRNA: 3'- -GGCGC-------------UGUGGU-GCCac---CUGGUUUa--CG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 15095 | 0.66 | 0.966056 |
Target: 5'- gCUGCc-CGCCAUcaGGUGGGCCAGc-GCa -3' miRNA: 3'- -GGCGcuGUGGUG--CCACCUGGUUuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 26624 | 0.66 | 0.954176 |
Target: 5'- gCCGCccaagcaugacgagGGCGCCACGGcgacaaaGGGCgAucuGAUGCa -3' miRNA: 3'- -GGCG--------------CUGUGGUGCCa------CCUGgU---UUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 49996 | 0.66 | 0.956903 |
Target: 5'- aCGCGGCGCUugucgcgguuggggcGCGcGUGGucGCCGGGcgGCg -3' miRNA: 3'- gGCGCUGUGG---------------UGC-CACC--UGGUUUa-CG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 111828 | 0.66 | 0.955358 |
Target: 5'- uCCGCGugacgGCugCGCGaGccGGCCAGGUGUc -3' miRNA: 3'- -GGCGC-----UGugGUGC-CacCUGGUUUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 31151 | 0.66 | 0.969181 |
Target: 5'- aCGCGcCGCgCGCGGagucGGACaguGUGCu -3' miRNA: 3'- gGCGCuGUG-GUGCCa---CCUGguuUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 62115 | 0.66 | 0.968266 |
Target: 5'- gCGCGugGCCACGauguccuucaugucGcUGGACCAc--GCc -3' miRNA: 3'- gGCGCugUGGUGC--------------C-ACCUGGUuuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 88141 | 0.66 | 0.955358 |
Target: 5'- -aGCGGCGCCAaaauUGuGUGGGCgcaCGAcgGCa -3' miRNA: 3'- ggCGCUGUGGU----GC-CACCUG---GUUuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 32840 | 0.66 | 0.969181 |
Target: 5'- gCGUGGCACCAaaaccUGGUGccguccGGCCAAAaGUa -3' miRNA: 3'- gGCGCUGUGGU-----GCCAC------CUGGUUUaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 11564 | 0.66 | 0.962714 |
Target: 5'- aCGCGcCGCCgaaGCGG-GGAgCGGuGUGCg -3' miRNA: 3'- gGCGCuGUGG---UGCCaCCUgGUU-UACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 131509 | 0.66 | 0.969181 |
Target: 5'- uCUGCGGCG-CGCGGUGcagcGGCUGGAaGCg -3' miRNA: 3'- -GGCGCUGUgGUGCCAC----CUGGUUUaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 1404 | 0.66 | 0.95915 |
Target: 5'- -aGCGGCGCCcUGGUGuGCUAuuuuuagcGGUGCg -3' miRNA: 3'- ggCGCUGUGGuGCCACcUGGU--------UUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 9802 | 0.66 | 0.95915 |
Target: 5'- gCGCGuGCACaguaACGuUGGGCCGgaccAGUGCu -3' miRNA: 3'- gGCGC-UGUGg---UGCcACCUGGU----UUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 62222 | 0.66 | 0.969181 |
Target: 5'- gCGCGACGauggaCAgGGUGGACgCGcgccGCg -3' miRNA: 3'- gGCGCUGUg----GUgCCACCUG-GUuua-CG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 42301 | 0.66 | 0.966056 |
Target: 5'- cCCGCGGCGCCAa-GUacaGAUCGAGcGCg -3' miRNA: 3'- -GGCGCUGUGGUgcCAc--CUGGUUUaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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