miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7006 3' -53.5 NC_001875.2 + 1181 0.66 0.955358
Target:  5'- gUCGCGGCacuuuGCCACGcUGaACCGcAUGCg -3'
miRNA:   3'- -GGCGCUG-----UGGUGCcACcUGGUuUACG- -5'
7006 3' -53.5 NC_001875.2 + 1404 0.66 0.95915
Target:  5'- -aGCGGCGCCcUGGUGuGCUAuuuuuagcGGUGCg -3'
miRNA:   3'- ggCGCUGUGGuGCCACcUGGU--------UUACG- -5'
7006 3' -53.5 NC_001875.2 + 2662 0.71 0.812451
Target:  5'- uUGCGGCGCCgGCGGcgccUGGGgCAAcUGCg -3'
miRNA:   3'- gGCGCUGUGG-UGCC----ACCUgGUUuACG- -5'
7006 3' -53.5 NC_001875.2 + 5913 0.68 0.910479
Target:  5'- aCGCGcuuaACCGCGGagucgauuaucGGACCGcGUGCa -3'
miRNA:   3'- gGCGCug--UGGUGCCa----------CCUGGUuUACG- -5'
7006 3' -53.5 NC_001875.2 + 6613 0.68 0.922155
Target:  5'- aCCGCGcCGCaCGCGGUGuACUc-GUGCc -3'
miRNA:   3'- -GGCGCuGUG-GUGCCACcUGGuuUACG- -5'
7006 3' -53.5 NC_001875.2 + 7450 0.67 0.932855
Target:  5'- gCCgGCGAUugCgGCGGUGuacGGCCGAuucUGCg -3'
miRNA:   3'- -GG-CGCUGugG-UGCCAC---CUGGUUu--ACG- -5'
7006 3' -53.5 NC_001875.2 + 8437 0.72 0.727234
Target:  5'- aCGCGAC-CCAUGaacacGGCCAAAUGCg -3'
miRNA:   3'- gGCGCUGuGGUGCcac--CUGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 9802 0.66 0.95915
Target:  5'- gCGCGuGCACaguaACGuUGGGCCGgaccAGUGCu -3'
miRNA:   3'- gGCGC-UGUGg---UGCcACCUGGU----UUACG- -5'
7006 3' -53.5 NC_001875.2 + 10271 0.67 0.942577
Target:  5'- aCCGCacauuuGACGCCGUGGUGGucgagGCCuu-UGCc -3'
miRNA:   3'- -GGCG------CUGUGGUGCCACC-----UGGuuuACG- -5'
7006 3' -53.5 NC_001875.2 + 11564 0.66 0.962714
Target:  5'- aCGCGcCGCCgaaGCGG-GGAgCGGuGUGCg -3'
miRNA:   3'- gGCGCuGUGG---UGCCaCCUgGUU-UACG- -5'
7006 3' -53.5 NC_001875.2 + 12370 0.66 0.965732
Target:  5'- cCCGaCGACgaggguGCCACGGUgccgcucgucgucGGGCCGcuguuUGCc -3'
miRNA:   3'- -GGC-GCUG------UGGUGCCA-------------CCUGGUuu---ACG- -5'
7006 3' -53.5 NC_001875.2 + 12440 0.77 0.446051
Target:  5'- gCGUGcGCGCCGCGGUGGACgccauuCAGcgGCa -3'
miRNA:   3'- gGCGC-UGUGGUGCCACCUG------GUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 12672 0.73 0.676506
Target:  5'- aCGCG-CGCCGCGuUGG-CCGGGUGUg -3'
miRNA:   3'- gGCGCuGUGGUGCcACCuGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 12965 0.67 0.934877
Target:  5'- gUCGCGGCgggcgugggcuccgcGCCGUGGUGG-CUAuuGAUGCa -3'
miRNA:   3'- -GGCGCUG---------------UGGUGCCACCuGGU--UUACG- -5'
7006 3' -53.5 NC_001875.2 + 13814 0.81 0.306525
Target:  5'- aCGCGAU-CCAUGGUGGugCAAcAUGCa -3'
miRNA:   3'- gGCGCUGuGGUGCCACCugGUU-UACG- -5'
7006 3' -53.5 NC_001875.2 + 15095 0.66 0.966056
Target:  5'- gCUGCc-CGCCAUcaGGUGGGCCAGc-GCa -3'
miRNA:   3'- -GGCGcuGUGGUG--CCACCUGGUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 15848 0.67 0.947075
Target:  5'- aCCGCGAgACCAgcGUGGugCucAUGa -3'
miRNA:   3'- -GGCGCUgUGGUgcCACCugGuuUACg -5'
7006 3' -53.5 NC_001875.2 + 17747 0.67 0.937837
Target:  5'- gUGCGuCGCCAUGccgcuuGUGGACaCGGcgGCg -3'
miRNA:   3'- gGCGCuGUGGUGC------CACCUG-GUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 18049 0.67 0.944405
Target:  5'- aUGCGACA-UGCGcGUGGcggacaaccggccaaGCCAGGUGCu -3'
miRNA:   3'- gGCGCUGUgGUGC-CACC---------------UGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 18169 0.7 0.829777
Target:  5'- gCGCGACGCCGCcacuGUGGcgguGCCGGcggGCg -3'
miRNA:   3'- gGCGCUGUGGUGc---CACC----UGGUUua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.