miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7006 3' -53.5 NC_001875.2 + 110432 1.15 0.002002
Target:  5'- aCCGCGACACCACGGUGGACCAAAUGCg -3'
miRNA:   3'- -GGCGCUGUGGUGCCACCUGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 13814 0.81 0.306525
Target:  5'- aCGCGAU-CCAUGGUGGugCAAcAUGCa -3'
miRNA:   3'- gGCGCUGuGGUGCCACCugGUU-UACG- -5'
7006 3' -53.5 NC_001875.2 + 12440 0.77 0.446051
Target:  5'- gCGUGcGCGCCGCGGUGGACgccauuCAGcgGCa -3'
miRNA:   3'- gGCGC-UGUGGUGCCACCUG------GUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 28960 0.76 0.542838
Target:  5'- gCCGCGGCuuUC-CGGUGGACaAAGUGCc -3'
miRNA:   3'- -GGCGCUGu-GGuGCCACCUGgUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 100158 0.75 0.55294
Target:  5'- gUCGCgGugAUCACGGUGGGCgCGAGcgGCa -3'
miRNA:   3'- -GGCG-CugUGGUGCCACCUG-GUUUa-CG- -5'
7006 3' -53.5 NC_001875.2 + 19119 0.75 0.593841
Target:  5'- uUCGaCGAgGCCACGcucGUGGGCCAAGcGCu -3'
miRNA:   3'- -GGC-GCUgUGGUGC---CACCUGGUUUaCG- -5'
7006 3' -53.5 NC_001875.2 + 95422 0.74 0.624841
Target:  5'- gCC-CGACACCGCGGcgccGGCCAGcGUGCg -3'
miRNA:   3'- -GGcGCUGUGGUGCCac--CUGGUU-UACG- -5'
7006 3' -53.5 NC_001875.2 + 47679 0.74 0.635196
Target:  5'- gCCGCGGCgcGCCGCGcGUuucucaacgcGGGgCAAGUGCa -3'
miRNA:   3'- -GGCGCUG--UGGUGC-CA----------CCUgGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 118103 0.74 0.645548
Target:  5'- gCGCGACGCCGCgcgaguGGUGGAgagcaUCAAAaGCg -3'
miRNA:   3'- gGCGCUGUGGUG------CCACCU-----GGUUUaCG- -5'
7006 3' -53.5 NC_001875.2 + 85820 0.74 0.65589
Target:  5'- uCCGCGGCGCCAgcUGcGUGGgcgGCCGAuccugcuguuGUGCa -3'
miRNA:   3'- -GGCGCUGUGGU--GC-CACC---UGGUU----------UACG- -5'
7006 3' -53.5 NC_001875.2 + 98288 0.74 0.65589
Target:  5'- cCCGCGGCgACCGCacuGUGG-CCAAcgcGUGCu -3'
miRNA:   3'- -GGCGCUG-UGGUGc--CACCuGGUU---UACG- -5'
7006 3' -53.5 NC_001875.2 + 12672 0.73 0.676506
Target:  5'- aCGCG-CGCCGCGuUGG-CCGGGUGUg -3'
miRNA:   3'- gGCGCuGUGGUGCcACCuGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 86144 0.73 0.676506
Target:  5'- gCGCGGCGCgCGCGGcgagaugacGGACguGGUGCg -3'
miRNA:   3'- gGCGCUGUG-GUGCCa--------CCUGguUUACG- -5'
7006 3' -53.5 NC_001875.2 + 42212 0.73 0.686763
Target:  5'- gCGCGGCGgCACGcGUGGugCuugucaauGUGCa -3'
miRNA:   3'- gGCGCUGUgGUGC-CACCugGuu------UACG- -5'
7006 3' -53.5 NC_001875.2 + 89110 0.73 0.686763
Target:  5'- gCGCGuCGCCGCGcGcgacGACCGGGUGCg -3'
miRNA:   3'- gGCGCuGUGGUGC-Cac--CUGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 69940 0.73 0.696974
Target:  5'- gCCGUGACACgGCGcGUgucGGGCCAcg-GCg -3'
miRNA:   3'- -GGCGCUGUGgUGC-CA---CCUGGUuuaCG- -5'
7006 3' -53.5 NC_001875.2 + 62610 0.73 0.707128
Target:  5'- gCCGUucGACGCCGCcGUGu-CCGAAUGCa -3'
miRNA:   3'- -GGCG--CUGUGGUGcCACcuGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 62889 0.72 0.717218
Target:  5'- gCGUGGCGCCggaagacaacgACGG-GGACCGGuacuUGCa -3'
miRNA:   3'- gGCGCUGUGG-----------UGCCaCCUGGUUu---ACG- -5'
7006 3' -53.5 NC_001875.2 + 37590 0.72 0.717218
Target:  5'- gCGCGAgCGCCGCGGccGGCCGcAcgGCg -3'
miRNA:   3'- gGCGCU-GUGGUGCCacCUGGU-UuaCG- -5'
7006 3' -53.5 NC_001875.2 + 36410 0.72 0.727234
Target:  5'- gCCGCGcacgcuggccgGCGCCGCGGUgucGGGCUG-GUGCu -3'
miRNA:   3'- -GGCGC-----------UGUGGUGCCA---CCUGGUuUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.