Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7006 | 3' | -53.5 | NC_001875.2 | + | 42539 | 0.71 | 0.77586 |
Target: 5'- gCCGCucGACAucuCCACGGUGGucgcgcCCAGccGCg -3' miRNA: 3'- -GGCG--CUGU---GGUGCCACCu-----GGUUuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 8437 | 0.72 | 0.727234 |
Target: 5'- aCGCGAC-CCAUGaacacGGCCAAAUGCg -3' miRNA: 3'- gGCGCUGuGGUGCcac--CUGGUUUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 36410 | 0.72 | 0.727234 |
Target: 5'- gCCGCGcacgcuggccgGCGCCGCGGUgucGGGCUG-GUGCu -3' miRNA: 3'- -GGCGC-----------UGUGGUGCCA---CCUGGUuUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 51966 | 0.72 | 0.747003 |
Target: 5'- gCCGC-ACGCgCGCGcGUGGACCAc--GCg -3' miRNA: 3'- -GGCGcUGUG-GUGC-CACCUGGUuuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 40863 | 0.72 | 0.756738 |
Target: 5'- aCGCG-CACCGCGG-GcGCCAuccuGGUGCa -3' miRNA: 3'- gGCGCuGUGGUGCCaCcUGGU----UUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 84448 | 0.71 | 0.76636 |
Target: 5'- -aGCGGCgGCgGCGGUaGACCAuGAUGCg -3' miRNA: 3'- ggCGCUG-UGgUGCCAcCUGGU-UUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 31917 | 0.71 | 0.76636 |
Target: 5'- gCCGCGcuGCACCGCGcGcGGGCCcgcucguUGCg -3' miRNA: 3'- -GGCGC--UGUGGUGC-CaCCUGGuuu----ACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 40668 | 0.71 | 0.76636 |
Target: 5'- aCGCaaGCGCCGCuGUGGACCAugacGcgGCg -3' miRNA: 3'- gGCGc-UGUGGUGcCACCUGGU----UuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 82038 | 0.71 | 0.76636 |
Target: 5'- aCGUgGACAUCGCGGcGGGCUgagcgGAAUGCu -3' miRNA: 3'- gGCG-CUGUGGUGCCaCCUGG-----UUUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 37590 | 0.72 | 0.717218 |
Target: 5'- gCGCGAgCGCCGCGGccGGCCGcAcgGCg -3' miRNA: 3'- gGCGCU-GUGGUGCCacCUGGU-UuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 62889 | 0.72 | 0.717218 |
Target: 5'- gCGUGGCGCCggaagacaacgACGG-GGACCGGuacuUGCa -3' miRNA: 3'- gGCGCUGUGG-----------UGCCaCCUGGUUu---ACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 62610 | 0.73 | 0.707128 |
Target: 5'- gCCGUucGACGCCGCcGUGu-CCGAAUGCa -3' miRNA: 3'- -GGCG--CUGUGGUGcCACcuGGUUUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 13814 | 0.81 | 0.306525 |
Target: 5'- aCGCGAU-CCAUGGUGGugCAAcAUGCa -3' miRNA: 3'- gGCGCUGuGGUGCCACCugGUU-UACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 12440 | 0.77 | 0.446051 |
Target: 5'- gCGUGcGCGCCGCGGUGGACgccauuCAGcgGCa -3' miRNA: 3'- gGCGC-UGUGGUGCCACCUG------GUUuaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 100158 | 0.75 | 0.55294 |
Target: 5'- gUCGCgGugAUCACGGUGGGCgCGAGcgGCa -3' miRNA: 3'- -GGCG-CugUGGUGCCACCUG-GUUUa-CG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 47679 | 0.74 | 0.635196 |
Target: 5'- gCCGCGGCgcGCCGCGcGUuucucaacgcGGGgCAAGUGCa -3' miRNA: 3'- -GGCGCUG--UGGUGC-CA----------CCUgGUUUACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 118103 | 0.74 | 0.645548 |
Target: 5'- gCGCGACGCCGCgcgaguGGUGGAgagcaUCAAAaGCg -3' miRNA: 3'- gGCGCUGUGGUG------CCACCU-----GGUUUaCG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 85820 | 0.74 | 0.65589 |
Target: 5'- uCCGCGGCGCCAgcUGcGUGGgcgGCCGAuccugcuguuGUGCa -3' miRNA: 3'- -GGCGCUGUGGU--GC-CACC---UGGUU----------UACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 98288 | 0.74 | 0.65589 |
Target: 5'- cCCGCGGCgACCGCacuGUGG-CCAAcgcGUGCu -3' miRNA: 3'- -GGCGCUG-UGGUGc--CACCuGGUU---UACG- -5' |
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7006 | 3' | -53.5 | NC_001875.2 | + | 42212 | 0.73 | 0.686763 |
Target: 5'- gCGCGGCGgCACGcGUGGugCuugucaauGUGCa -3' miRNA: 3'- gGCGCUGUgGUGC-CACCugGuu------UACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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