miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 3' -48.1 NC_001875.2 + 131691 0.66 0.999516
Target:  5'- uUGGCGCCGcGu--GCCUgcc-UUGCa -3'
miRNA:   3'- gGCCGCGGCaCuuuUGGAaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 57516 0.66 0.999516
Target:  5'- cCCGGCGCCacaaacGUGuuguagcuAGAGCagcg-GUUGCg -3'
miRNA:   3'- -GGCCGCGG------CAC--------UUUUGgaaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 16902 0.66 0.999516
Target:  5'- gCGGCGCCGcGAugucGCUgaUUGU-GCu -3'
miRNA:   3'- gGCCGCGGCaCUuu--UGGaaAACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 62891 0.66 0.999494
Target:  5'- gUGGCGCCGgaagacaacgacGggGACCgguacUUGCa -3'
miRNA:   3'- gGCCGCGGCa-----------CuuUUGGaaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 73855 0.66 0.999447
Target:  5'- gCUGGUGCCGUuggugcggcgcGAAAACCgcgaaacgGCg -3'
miRNA:   3'- -GGCCGCGGCA-----------CUUUUGGaaaacaa-CG- -5'
7007 3' -48.1 NC_001875.2 + 29962 0.66 0.999397
Target:  5'- aCGGCGCUGUuu--GCgUUUUUGUuuUGCa -3'
miRNA:   3'- gGCCGCGGCAcuuuUG-GAAAACA--ACG- -5'
7007 3' -48.1 NC_001875.2 + 97605 0.66 0.999397
Target:  5'- aCGcGUGCCGUGAGGGgCUggccaaUUGCc -3'
miRNA:   3'- gGC-CGCGGCACUUUUgGAaaac--AACG- -5'
7007 3' -48.1 NC_001875.2 + 3551 0.66 0.999397
Target:  5'- aCCGGCGCCGUGGcgcgucucAAAUac-UUGUc-- -3'
miRNA:   3'- -GGCCGCGGCACU--------UUUGgaaAACAacg -5'
7007 3' -48.1 NC_001875.2 + 70021 0.66 0.999252
Target:  5'- aCGuGCGCCGUGuuGGCauugaUUGU-GCg -3'
miRNA:   3'- gGC-CGCGGCACuuUUGgaa--AACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 9160 0.66 0.999252
Target:  5'- aCGGCGCaCGcc--AACUUUUUGcUGCg -3'
miRNA:   3'- gGCCGCG-GCacuuUUGGAAAACaACG- -5'
7007 3' -48.1 NC_001875.2 + 103455 0.66 0.999236
Target:  5'- gCGGCGUCGUGcAcgccgcgacguacGACCUUUUaaagGCg -3'
miRNA:   3'- gGCCGCGGCACuU-------------UUGGAAAAcaa-CG- -5'
7007 3' -48.1 NC_001875.2 + 16762 0.66 0.999186
Target:  5'- cCCGGCGUCGUGAcugcgcgccgcguaAAGCUUcaccaUGUuuccaauUGCg -3'
miRNA:   3'- -GGCCGCGGCACU--------------UUUGGAaa---ACA-------ACG- -5'
7007 3' -48.1 NC_001875.2 + 40606 0.66 0.999078
Target:  5'- aCGGCGCCGUGGugggcGCCa-------- -3'
miRNA:   3'- gGCCGCGGCACUuu---UGGaaaacaacg -5'
7007 3' -48.1 NC_001875.2 + 30196 0.66 0.999059
Target:  5'- uUGGCGCCGUucgccgcGAcgGCCg-UUGUgGCg -3'
miRNA:   3'- gGCCGCGGCA-------CUuuUGGaaAACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 41118 0.66 0.998872
Target:  5'- aCGGCGUCGUGu--GCCagcgcgUGCc -3'
miRNA:   3'- gGCCGCGGCACuuuUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 125528 0.66 0.998872
Target:  5'- uUCGGCGCUGcccc-ACCaugcUUGUUGCg -3'
miRNA:   3'- -GGCCGCGGCacuuuUGGaa--AACAACG- -5'
7007 3' -48.1 NC_001875.2 + 14175 0.66 0.998802
Target:  5'- aUGGgGCCGUGcGcaaagcgccuacguGACUUgugUGUUGCg -3'
miRNA:   3'- gGCCgCGGCACuU--------------UUGGAaa-ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 12672 0.67 0.998626
Target:  5'- aCGcGCGCCGcGuuGGCCgggUGUgGCg -3'
miRNA:   3'- gGC-CGCGGCaCuuUUGGaaaACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 105263 0.67 0.998626
Target:  5'- -gGGCGCCGUGcAAACgCUcaaucugUGCa -3'
miRNA:   3'- ggCCGCGGCACuUUUG-GAaaaca--ACG- -5'
7007 3' -48.1 NC_001875.2 + 101196 0.67 0.998599
Target:  5'- gCCGGCGCCcaacuugccguuuGUcGAcgGCUUUg-GUUGCg -3'
miRNA:   3'- -GGCCGCGG-------------CA-CUuuUGGAAaaCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.