miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 5' -58 NC_001875.2 + 66238 0.66 0.797718
Target:  5'- cCGGguGa---GCGUuucgCACuGCGCCGCCa -3'
miRNA:   3'- -GCCguCguuaCGCA----GUGcCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 42992 0.66 0.814429
Target:  5'- gCGGCGGCcguUGCGaagguggccuccaUUGCGaGUGCCGCg -3'
miRNA:   3'- -GCCGUCGuu-ACGC-------------AGUGC-CGCGGUGg -5'
7007 5' -58 NC_001875.2 + 127279 0.66 0.823838
Target:  5'- gCGGCuGCuc-GCGUUGCuGGCgGCCcCCa -3'
miRNA:   3'- -GCCGuCGuuaCGCAGUG-CCG-CGGuGG- -5'
7007 5' -58 NC_001875.2 + 17737 0.66 0.779552
Target:  5'- cCGuGguGCuGUGCGUCGCcaUGCCGCUu -3'
miRNA:   3'- -GC-CguCGuUACGCAGUGccGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 41808 0.66 0.788705
Target:  5'- cCGGCAcGC---GCG-C-CGGCGCCGCg -3'
miRNA:   3'- -GCCGU-CGuuaCGCaGuGCCGCGGUGg -5'
7007 5' -58 NC_001875.2 + 50034 0.66 0.779552
Target:  5'- gGGCGGCGAgGCGgC-CGGCccGUCGCUg -3'
miRNA:   3'- gCCGUCGUUaCGCaGuGCCG--CGGUGG- -5'
7007 5' -58 NC_001875.2 + 122058 0.66 0.797718
Target:  5'- aCGcGCAGUgcccgGAUGUGcCGCGuGCGCUugGCCu -3'
miRNA:   3'- -GC-CGUCG-----UUACGCaGUGC-CGCGG--UGG- -5'
7007 5' -58 NC_001875.2 + 28106 0.66 0.788705
Target:  5'- gGGCGGCGAgGCGUUGgaguuuuauuCGGa-CCACCg -3'
miRNA:   3'- gCCGUCGUUaCGCAGU----------GCCgcGGUGG- -5'
7007 5' -58 NC_001875.2 + 97528 0.66 0.792328
Target:  5'- gGGCgaaauugugaccgaaGGCAAcGCG-CACGaGUGCCACa -3'
miRNA:   3'- gCCG---------------UCGUUaCGCaGUGC-CGCGGUGg -5'
7007 5' -58 NC_001875.2 + 17287 0.66 0.806584
Target:  5'- -cGCcGCAcuggaGCGUCGUGaGCGCCGCCg -3'
miRNA:   3'- gcCGuCGUua---CGCAGUGC-CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 14401 0.66 0.788705
Target:  5'- uGGuCGGgGGgaGCGUaugGGCGCCACCg -3'
miRNA:   3'- gCC-GUCgUUa-CGCAgugCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 6938 0.66 0.797718
Target:  5'- ---gAGCAAcGCGUCguGCGuGCGCCGCg -3'
miRNA:   3'- gccgUCGUUaCGCAG--UGC-CGCGGUGg -5'
7007 5' -58 NC_001875.2 + 114719 0.66 0.796824
Target:  5'- aCGGCgugugcuauuuuuGGCGGUGCGUCA--GCGaCgACCg -3'
miRNA:   3'- -GCCG-------------UCGUUACGCAGUgcCGC-GgUGG- -5'
7007 5' -58 NC_001875.2 + 74367 0.66 0.788705
Target:  5'- aCGGCGuGCGcgGC--CGCGGCGCguUCa -3'
miRNA:   3'- -GCCGU-CGUuaCGcaGUGCCGCGguGG- -5'
7007 5' -58 NC_001875.2 + 55898 0.66 0.779552
Target:  5'- uGGCcGCGGUcaGCuuuUCGCGGC-CCACCc -3'
miRNA:   3'- gCCGuCGUUA--CGc--AGUGCCGcGGUGG- -5'
7007 5' -58 NC_001875.2 + 18158 0.66 0.788705
Target:  5'- uGGU-GCGGcGCG-CGCGaCGCCGCCa -3'
miRNA:   3'- gCCGuCGUUaCGCaGUGCcGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 111945 0.66 0.811829
Target:  5'- aCGaGCAGCuaaaagcgcacGCGUUucgcaaACGGCGCCcgcGCCg -3'
miRNA:   3'- -GC-CGUCGuua--------CGCAG------UGCCGCGG---UGG- -5'
7007 5' -58 NC_001875.2 + 82957 0.66 0.797718
Target:  5'- -cGCGGCGGgcGCGUCcuCGGCGaCCgACCc -3'
miRNA:   3'- gcCGUCGUUa-CGCAGu-GCCGC-GG-UGG- -5'
7007 5' -58 NC_001875.2 + 37826 0.66 0.77863
Target:  5'- aGGCGGUg--GCGaUCACGuacgacacgcugcGCGCgCACCa -3'
miRNA:   3'- gCCGUCGuuaCGC-AGUGC-------------CGCG-GUGG- -5'
7007 5' -58 NC_001875.2 + 110474 0.66 0.797718
Target:  5'- aGGCcaaccGCAAguaccGCGUCaagcacACGGCGCUGCUc -3'
miRNA:   3'- gCCGu----CGUUa----CGCAG------UGCCGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.