Results 1 - 20 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7007 | 5' | -58 | NC_001875.2 | + | 111121 | 1.12 | 0.001048 |
Target: 5'- aCGGCAGCAAUGCGUCACGGCGCCACCu -3' miRNA: 3'- -GCCGUCGUUACGCAGUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 111150 | 0.86 | 0.062561 |
Target: 5'- gCGGCGGCuugGUGUCACGGCGCUGCUu -3' miRNA: 3'- -GCCGUCGuuaCGCAGUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 66110 | 0.83 | 0.095672 |
Target: 5'- cCGcGCGGCGGgcgGCGagGCGGCGCCGCCc -3' miRNA: 3'- -GC-CGUCGUUa--CGCagUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 77037 | 0.83 | 0.106249 |
Target: 5'- uCGGCAGCc--GCGUCGCGGUGCUaguGCCg -3' miRNA: 3'- -GCCGUCGuuaCGCAGUGCCGCGG---UGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 1381 | 0.81 | 0.133833 |
Target: 5'- aCGGCgcgugcuAGCGGUGCGUCAgCGGCGCC-CUg -3' miRNA: 3'- -GCCG-------UCGUUACGCAGU-GCCGCGGuGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 57338 | 0.81 | 0.137669 |
Target: 5'- gCGGCAGCGcUGCG-CGCGGCGaaACCg -3' miRNA: 3'- -GCCGUCGUuACGCaGUGCCGCggUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 113624 | 0.8 | 0.148648 |
Target: 5'- gCGGCGGCAAgaGCGgcgACGGCGCCGCg -3' miRNA: 3'- -GCCGUCGUUa-CGCag-UGCCGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 8994 | 0.8 | 0.156405 |
Target: 5'- uGGCAGCGAaacaCGUCGCGGCG-CACCa -3' miRNA: 3'- gCCGUCGUUac--GCAGUGCCGCgGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 36101 | 0.8 | 0.160419 |
Target: 5'- gCGGCAGCAcgcgGCG--GCGGCGCCGCUc -3' miRNA: 3'- -GCCGUCGUua--CGCagUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 97479 | 0.79 | 0.173024 |
Target: 5'- aCGGCAGCAAcUGCGUCucuuGCGCCGCg -3' miRNA: 3'- -GCCGUCGUU-ACGCAGugc-CGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 81556 | 0.79 | 0.177418 |
Target: 5'- uGGCAGCGAUcGCGcUCGCGGUGUUGCUg -3' miRNA: 3'- gCCGUCGUUA-CGC-AGUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 68564 | 0.79 | 0.186505 |
Target: 5'- gCGGCGGCGGUcGCG-CACcgcguGGCGCCGCUg -3' miRNA: 3'- -GCCGUCGUUA-CGCaGUG-----CCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 18654 | 0.79 | 0.1912 |
Target: 5'- gGGCAcgucGCAGcGCGUCACGGUGCgGCUg -3' miRNA: 3'- gCCGU----CGUUaCGCAGUGCCGCGgUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 11912 | 0.78 | 0.200903 |
Target: 5'- aCGGCGGCGAgcagguguuuUGCG-CGCGGCG-CGCCg -3' miRNA: 3'- -GCCGUCGUU----------ACGCaGUGCCGCgGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 89292 | 0.78 | 0.200903 |
Target: 5'- aGGguGUAGUGgcCG-CAUGGCGCCGCCa -3' miRNA: 3'- gCCguCGUUAC--GCaGUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 76688 | 0.78 | 0.200903 |
Target: 5'- gCGGCuGUAuuUGUGUC-CGGUGCCGCCg -3' miRNA: 3'- -GCCGuCGUu-ACGCAGuGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 4426 | 0.78 | 0.205913 |
Target: 5'- aCGGCGGC-AUGC-UgACGcGCGCCGCCa -3' miRNA: 3'- -GCCGUCGuUACGcAgUGC-CGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 50834 | 0.78 | 0.211031 |
Target: 5'- cCGGCAGCAAcGCGUCGCG-CGCCuuuuUCa -3' miRNA: 3'- -GCCGUCGUUaCGCAGUGCcGCGGu---GG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 65799 | 0.78 | 0.221596 |
Target: 5'- uCGGCGcGCGGUGCcugCGCGGCGCCAa- -3' miRNA: 3'- -GCCGU-CGUUACGca-GUGCCGCGGUgg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 108885 | 0.78 | 0.221596 |
Target: 5'- gCGGCGGag--GCGUaCAUGGCGCCGCa -3' miRNA: 3'- -GCCGUCguuaCGCA-GUGCCGCGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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