miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 5' -58 NC_001875.2 + 4537 0.75 0.308551
Target:  5'- cCGGCuGCGGuuccUGCgGUUugGGgGCCGCCa -3'
miRNA:   3'- -GCCGuCGUU----ACG-CAGugCCgCGGUGG- -5'
7007 5' -58 NC_001875.2 + 37101 0.77 0.227045
Target:  5'- cCGcGUGGguGUGCGggCGCGGCGCCGCg -3'
miRNA:   3'- -GC-CGUCguUACGCa-GUGCCGCGGUGg -5'
7007 5' -58 NC_001875.2 + 84410 0.77 0.238284
Target:  5'- uCGGCGGCGGcGCGUauaGGUGCCAUCg -3'
miRNA:   3'- -GCCGUCGUUaCGCAgugCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 47648 0.77 0.249984
Target:  5'- cCGGCAGCuguUGCGcaaacgCACGGaCGCgGCCg -3'
miRNA:   3'- -GCCGUCGuu-ACGCa-----GUGCC-GCGgUGG- -5'
7007 5' -58 NC_001875.2 + 33144 0.77 0.256011
Target:  5'- uGGCGGCAggGCaacagCACGGCGUCGCg -3'
miRNA:   3'- gCCGUCGUuaCGca---GUGCCGCGGUGg -5'
7007 5' -58 NC_001875.2 + 119055 0.77 0.256011
Target:  5'- cCGGCGuGCGcAUGUG-CGCGGCGCC-CCg -3'
miRNA:   3'- -GCCGU-CGU-UACGCaGUGCCGCGGuGG- -5'
7007 5' -58 NC_001875.2 + 70196 0.76 0.281309
Target:  5'- gGGCGGCGAcgGCGacCACugggcgcccgaGGCGCCGCCg -3'
miRNA:   3'- gCCGUCGUUa-CGCa-GUG-----------CCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 29812 0.75 0.304339
Target:  5'- uGGCGGCGcAUGgGUCaACGGCacgcugcaguccaccGCCGCCg -3'
miRNA:   3'- gCCGUCGU-UACgCAG-UGCCG---------------CGGUGG- -5'
7007 5' -58 NC_001875.2 + 44463 0.75 0.308551
Target:  5'- uCGGC-GCAGUGCGcCAagucgugcacCGGCGCgACCa -3'
miRNA:   3'- -GCCGuCGUUACGCaGU----------GCCGCGgUGG- -5'
7007 5' -58 NC_001875.2 + 50834 0.78 0.211031
Target:  5'- cCGGCAGCAAcGCGUCGCG-CGCCuuuuUCa -3'
miRNA:   3'- -GCCGUCGUUaCGCAGUGCcGCGGu---GG- -5'
7007 5' -58 NC_001875.2 + 4426 0.78 0.205913
Target:  5'- aCGGCGGC-AUGC-UgACGcGCGCCGCCa -3'
miRNA:   3'- -GCCGUCGuUACGcAgUGC-CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 76688 0.78 0.200903
Target:  5'- gCGGCuGUAuuUGUGUC-CGGUGCCGCCg -3'
miRNA:   3'- -GCCGuCGUu-ACGCAGuGCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 77037 0.83 0.106249
Target:  5'- uCGGCAGCc--GCGUCGCGGUGCUaguGCCg -3'
miRNA:   3'- -GCCGUCGuuaCGCAGUGCCGCGG---UGG- -5'
7007 5' -58 NC_001875.2 + 57338 0.81 0.137669
Target:  5'- gCGGCAGCGcUGCG-CGCGGCGaaACCg -3'
miRNA:   3'- -GCCGUCGUuACGCaGUGCCGCggUGG- -5'
7007 5' -58 NC_001875.2 + 113624 0.8 0.148648
Target:  5'- gCGGCGGCAAgaGCGgcgACGGCGCCGCg -3'
miRNA:   3'- -GCCGUCGUUa-CGCag-UGCCGCGGUGg -5'
7007 5' -58 NC_001875.2 + 8994 0.8 0.156405
Target:  5'- uGGCAGCGAaacaCGUCGCGGCG-CACCa -3'
miRNA:   3'- gCCGUCGUUac--GCAGUGCCGCgGUGG- -5'
7007 5' -58 NC_001875.2 + 81556 0.79 0.177418
Target:  5'- uGGCAGCGAUcGCGcUCGCGGUGUUGCUg -3'
miRNA:   3'- gCCGUCGUUA-CGC-AGUGCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 68564 0.79 0.186505
Target:  5'- gCGGCGGCGGUcGCG-CACcgcguGGCGCCGCUg -3'
miRNA:   3'- -GCCGUCGUUA-CGCaGUG-----CCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 89292 0.78 0.200903
Target:  5'- aGGguGUAGUGgcCG-CAUGGCGCCGCCa -3'
miRNA:   3'- gCCguCGUUAC--GCaGUGCCGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 11912 0.78 0.200903
Target:  5'- aCGGCGGCGAgcagguguuuUGCG-CGCGGCG-CGCCg -3'
miRNA:   3'- -GCCGUCGUU----------ACGCaGUGCCGCgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.