miRNA display CGI


Results 1 - 20 of 308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 5' -58 NC_001875.2 + 58 0.69 0.651956
Target:  5'- uCGGCGGCGGcgGCGa-ACGacaccaaugacGCGCCGCCc -3'
miRNA:   3'- -GCCGUCGUUa-CGCagUGC-----------CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 1265 0.7 0.570843
Target:  5'- --uUAGCGGUGCGUCAuCGGCGacCCugCu -3'
miRNA:   3'- gccGUCGUUACGCAGU-GCCGC--GGugG- -5'
7007 5' -58 NC_001875.2 + 1316 0.73 0.409717
Target:  5'- aGGCgcgugcuauuuuuAGCGGUGCGUCAgCGGCGacCCugCu -3'
miRNA:   3'- gCCG-------------UCGUUACGCAGU-GCCGC--GGugG- -5'
7007 5' -58 NC_001875.2 + 1381 0.81 0.133833
Target:  5'- aCGGCgcgugcuAGCGGUGCGUCAgCGGCGCC-CUg -3'
miRNA:   3'- -GCCG-------UCGUUACGCAGU-GCCGCGGuGG- -5'
7007 5' -58 NC_001875.2 + 1414 0.71 0.492378
Target:  5'- uGGUgugcuauuuuuAGCGGUGCGUCAgCGGCGacCCugCu -3'
miRNA:   3'- gCCG-----------UCGUUACGCAGU-GCCGC--GGugG- -5'
7007 5' -58 NC_001875.2 + 1741 0.66 0.805704
Target:  5'- aCGGCgugugcuAGCGGUGCcUCAgCGGCGacCCugCu -3'
miRNA:   3'- -GCCG-------UCGUUACGcAGU-GCCGC--GGugG- -5'
7007 5' -58 NC_001875.2 + 1868 0.74 0.344604
Target:  5'- aGGCgcgugcuauuuuuAGCAGUGCGUCAgCGGCGacCCugCu -3'
miRNA:   3'- gCCG-------------UCGUUACGCAGU-GCCGC--GGugG- -5'
7007 5' -58 NC_001875.2 + 2639 0.67 0.751347
Target:  5'- uGGCAcaGCAcgGacaCGUCuacuuGCGGCGCCGgCg -3'
miRNA:   3'- gCCGU--CGUuaC---GCAG-----UGCCGCGGUgG- -5'
7007 5' -58 NC_001875.2 + 3048 0.68 0.702385
Target:  5'- gGGCAGCGcguaagagGCGcgcaGCGGCG-CGCCg -3'
miRNA:   3'- gCCGUCGUua------CGCag--UGCCGCgGUGG- -5'
7007 5' -58 NC_001875.2 + 3091 0.7 0.600114
Target:  5'- aCGGCgugcacgcgccggGGCGcgGC-UCGCGGCGCagACCu -3'
miRNA:   3'- -GCCG-------------UCGUuaCGcAGUGCCGCGg-UGG- -5'
7007 5' -58 NC_001875.2 + 3132 0.69 0.620426
Target:  5'- gGGCGGCGAagcccgcUGCGcggaCGCGGCGUCGg- -3'
miRNA:   3'- gCCGUCGUU-------ACGCa---GUGCCGCGGUgg -5'
7007 5' -58 NC_001875.2 + 3165 0.67 0.732009
Target:  5'- gGGCGGCGAguagGUGagccgGCGGCcGCgCACCa -3'
miRNA:   3'- gCCGUCGUUa---CGCag---UGCCG-CG-GUGG- -5'
7007 5' -58 NC_001875.2 + 3853 0.71 0.521298
Target:  5'- -aGCAGCAgguucGUGUGgCACGGCagcaccgcGCCGCCa -3'
miRNA:   3'- gcCGUCGU-----UACGCaGUGCCG--------CGGUGG- -5'
7007 5' -58 NC_001875.2 + 4426 0.78 0.205913
Target:  5'- aCGGCGGC-AUGC-UgACGcGCGCCGCCa -3'
miRNA:   3'- -GCCGUCGuUACGcAgUGC-CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 4537 0.75 0.308551
Target:  5'- cCGGCuGCGGuuccUGCgGUUugGGgGCCGCCa -3'
miRNA:   3'- -GCCGuCGUU----ACG-CAGugCCgCGGUGG- -5'
7007 5' -58 NC_001875.2 + 5002 0.67 0.770269
Target:  5'- uGuGCGGCAcuUGUG-CACuuuGCGCCGCCu -3'
miRNA:   3'- gC-CGUCGUu-ACGCaGUGc--CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 5931 0.67 0.722208
Target:  5'- gGGUAGCGccGCG-CAggugGGCGCgGCCu -3'
miRNA:   3'- gCCGUCGUuaCGCaGUg---CCGCGgUGG- -5'
7007 5' -58 NC_001875.2 + 6938 0.66 0.797718
Target:  5'- ---gAGCAAcGCGUCguGCGuGCGCCGCg -3'
miRNA:   3'- gccgUCGUUaCGCAG--UGC-CGCGGUGg -5'
7007 5' -58 NC_001875.2 + 7566 0.72 0.482903
Target:  5'- aGGCGGCGGguCGUCgACGaccaacGCGCCGCCu -3'
miRNA:   3'- gCCGUCGUUacGCAG-UGC------CGCGGUGG- -5'
7007 5' -58 NC_001875.2 + 8305 0.67 0.732009
Target:  5'- aCGGcCAGCA--GCGggUugGGUGCaCGCCc -3'
miRNA:   3'- -GCC-GUCGUuaCGCa-GugCCGCG-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.