miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 5' -60.6 NC_001875.2 + 38542 0.66 0.699539
Target:  5'- uGCaGCu-CGUGGCCGGGUUgcugcgucgGCGCg -3'
miRNA:   3'- gCGgCGcuGCGCCGGCUCAGaa-------CGCG- -5'
7008 5' -60.6 NC_001875.2 + 3834 0.66 0.670114
Target:  5'- gCGCaCGcCGGCGCGGCCGcAGcCUccaacaUGUGa -3'
miRNA:   3'- -GCG-GC-GCUGCGCCGGC-UCaGA------ACGCg -5'
7008 5' -60.6 NC_001875.2 + 49996 0.66 0.699539
Target:  5'- aCGCgGCGcuuguCGCGGuuGGGgc--GCGCg -3'
miRNA:   3'- -GCGgCGCu----GCGCCggCUCagaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 73607 0.66 0.689773
Target:  5'- uGCgGCGAUgGgGGCCGAcGUUUUGauagaGCa -3'
miRNA:   3'- gCGgCGCUG-CgCCGGCU-CAGAACg----CG- -5'
7008 5' -60.6 NC_001875.2 + 10403 0.66 0.71312
Target:  5'- gCGCCGUGGCGCGGCacccgCUgcacuacccaacauuUGgCGCa -3'
miRNA:   3'- -GCGGCGCUGCGCCGgcucaGA---------------AC-GCG- -5'
7008 5' -60.6 NC_001875.2 + 54431 0.66 0.669128
Target:  5'- uCGCCgaacagcGCGugGCGGUCGuuAGcCgcgGCGCc -3'
miRNA:   3'- -GCGG-------CGCugCGCCGGC--UCaGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 95748 0.66 0.679962
Target:  5'- cCGCCGCG-UGCuGCCGcG-CgaGCGCg -3'
miRNA:   3'- -GCGGCGCuGCGcCGGCuCaGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 110705 0.66 0.679962
Target:  5'- gCGCCGCGuuCGUGGCUuucgcaacgGAGaacgCgggGCGCg -3'
miRNA:   3'- -GCGGCGCu-GCGCCGG---------CUCa---Gaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 105210 0.66 0.686834
Target:  5'- uCGCCGUGGCGCccucgucaugcuugGGCgGccuGUCaugGCGCc -3'
miRNA:   3'- -GCGGCGCUGCG--------------CCGgCu--CAGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 84340 0.66 0.718903
Target:  5'- aGCgGCGA-GUGGCgGAG-CggcUGCGCc -3'
miRNA:   3'- gCGgCGCUgCGCCGgCUCaGa--ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 33241 0.66 0.718903
Target:  5'- gCGCCGUuucGGCGCGGCgcucCGAGU--UGCa- -3'
miRNA:   3'- -GCGGCG---CUGCGCCG----GCUCAgaACGcg -5'
7008 5' -60.6 NC_001875.2 + 68894 0.66 0.699539
Target:  5'- aCGCCGCGuccgGCGaguGUCGAGUCaacgagcUGUGCg -3'
miRNA:   3'- -GCGGCGCug--CGC---CGGCUCAGa------ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 1027 0.66 0.689773
Target:  5'- aGCgCGUGGCGgGGCCcGAggcgcacagcGUUggGCGCa -3'
miRNA:   3'- gCG-GCGCUGCgCCGG-CU----------CAGaaCGCG- -5'
7008 5' -60.6 NC_001875.2 + 70334 0.66 0.728485
Target:  5'- aGCaCGCGGacUGCGgcGCCGAGcCggcGCGCa -3'
miRNA:   3'- gCG-GCGCU--GCGC--CGGCUCaGaa-CGCG- -5'
7008 5' -60.6 NC_001875.2 + 117337 0.66 0.708283
Target:  5'- aCGgCGCGGCGCgggcgaaccggcgGGCCGGcuggccGUCggggagGCGCc -3'
miRNA:   3'- -GCgGCGCUGCG-------------CCGGCU------CAGaa----CGCG- -5'
7008 5' -60.6 NC_001875.2 + 55364 0.66 0.679962
Target:  5'- uCGUCGuCGucCGCGGCCGuuUUgccgGCGCc -3'
miRNA:   3'- -GCGGC-GCu-GCGCCGGCucAGaa--CGCG- -5'
7008 5' -60.6 NC_001875.2 + 49931 0.66 0.688794
Target:  5'- aGCCGCG-CGCGcuaaucaGCUGGucGUCggagcUGCGCg -3'
miRNA:   3'- gCGGCGCuGCGC-------CGGCU--CAGa----ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 31006 0.66 0.709251
Target:  5'- aCG-CGCG-CGCGGCCGA--CUUG-GCa -3'
miRNA:   3'- -GCgGCGCuGCGCCGGCUcaGAACgCG- -5'
7008 5' -60.6 NC_001875.2 + 82388 0.66 0.709251
Target:  5'- aCGCgGCGAcCGUcGCUGAGUCgcugagcuacaUGUGCa -3'
miRNA:   3'- -GCGgCGCU-GCGcCGGCUCAGa----------ACGCG- -5'
7008 5' -60.6 NC_001875.2 + 58785 0.66 0.689773
Target:  5'- uGUCGCGGCGCaaaacagcGCCGAGUuggcccagCUgcacgcggaaaUGCGCg -3'
miRNA:   3'- gCGGCGCUGCGc-------CGGCUCA--------GA-----------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.